View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21634_high_4 (Length: 386)
Name: NF21634_high_4
Description: NF21634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21634_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 3592343 - 3591978
Alignment:
| Q |
17 |
acaatgcagattgacagtgttcatgaagatggtgcagtggtttttaaagatggaaatgcagttattgctgacttcattgtacattgcacagggtattctt |
116 |
Q |
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| T |
3592343 |
acaatgcagattgacagtgttcatgaagatggtgcagtggtttttaaagatggaaatgcagttatcgctgacttcattgtacattgcacagggtattctt |
3592244 |
T |
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| Q |
117 |
agcattccctattagtttttcttttaaaccagtttatattgtggacttaagttttaaatcgtaaatgcggctgcaatacaaatgttttggaggaaccgca |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592243 |
agcattccctattagtttttcttttaaaccagttcatattgtggacttaagttttaaatcgtaaatgcggctgcaatacaaatgttttggaggaaccgca |
3592144 |
T |
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| Q |
217 |
tttatcgacaatgtcaaaattgcaaagttatagcaacgacaggcacaactgcaatttaaaaccatgttgaggactcaaatatatttaggcataagtaacc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592143 |
tttatcgacaatgtcaaaattgcaaagttatagcaacgacaggcacaactgcaatttaaaaccatgttgaggactcaaatatatttaggcataagtaacc |
3592044 |
T |
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| Q |
317 |
tgcaattgagacataaagtcttgcatattaactaaaagaaaaaagtgaaccaatgatgatgtccat |
382 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
3592043 |
tgcaattgagacataaagtcttgcatattaactacaagaaaaaagtgaaccaatgttgatgtccat |
3591978 |
T |
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