View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21634_high_6 (Length: 365)
Name: NF21634_high_6
Description: NF21634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21634_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39305362 - 39305122
Alignment:
| Q |
1 |
ttaattaacaaaccagaatcctctcatgagtcattggccatcataagtacgtttagtgattctgtttgaatattggcatatgattgaatttggacttgtt |
100 |
Q |
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| T |
39305362 |
ttaattaacaaaccagaatcctctcatgagtcattggccatcataagtacgttgagtgattctgtttgaatattggcatatgattgaatttagacttgtt |
39305263 |
T |
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| Q |
101 |
gtgcatattcac---tcagtgcaacttttgtgcaatttatcattttccttgtcaatattacacga----caatgacaaacaaaagcttcaagatcatttt |
193 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39305262 |
gtgcatattcactaattagtgcaacttttgtgcaatttatcattttccttgtcaatattacacgacaatcaatgacaaacaaaagcttcaagatcatttt |
39305163 |
T |
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| Q |
194 |
attttgaaaagtggcnnnnnnncattacattaattgtatgtg |
235 |
Q |
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| T |
39305162 |
attttgaaaagtggc-aaaaaacattacattaattgtatgtg |
39305122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 326 - 365
Target Start/End: Complemental strand, 39305031 - 39304992
Alignment:
| Q |
326 |
ccaaacataaaattagcttggtcttactcattcataccaa |
365 |
Q |
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| T |
39305031 |
ccaaacataaaattagcttggtcttactcattcataccaa |
39304992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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