View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21634_high_7 (Length: 360)
Name: NF21634_high_7
Description: NF21634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21634_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 24748623 - 24748975
Alignment:
| Q |
1 |
atcaacctctcataattgatctacattctcaaattcctccaaaaacctaaatacaaacccatacaatattttttcagaaaaatgaatagnnnnnnnccca |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
24748623 |
atcaacctctcataattgatctacatcctcaaattcctccaaaaacctaaatacaaacccatacaatattttttcagaaaaatgaata-aaaaaaaccca |
24748721 |
T |
|
| Q |
101 |
aacacaaatccttgagatccaatggattacatcaatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaagaatcaaaacccactgttcc |
200 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24748722 |
aacacaaatccttgagatccaaaggattacatctatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaagaatcaaaacccactgttct |
24748821 |
T |
|
| Q |
201 |
catctcttctcacacggttccaatttctttgttccaatccctctcgttttttcatcgttcttctcacactgttccgatttctacaccctcattttttcag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| |
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| T |
24748822 |
gatctcttctcacacggttccaatttctttgttccaatccctctcgttttttcatcgttcttctcacactattccgatttttacaccctca-tttttcag |
24748920 |
T |
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| Q |
301 |
ttttgatttgtgcatatacaacacacaagtttcgatttgttccattcatctcact |
355 |
Q |
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| T |
24748921 |
ttacgatttgtgcatatacaacacacaagtttcgatttgttccattcatctcact |
24748975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 17370873 - 17371225
Alignment:
| Q |
1 |
atcaacctctcataattgatctacattctcaaattcctccaaaaacctaaatacaaacccatacaatattttttcagaaaaatgaatagnnnnnnnccca |
100 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17370873 |
atcaacctctcataactgatctacatcgtcaaattcctccaaaaacctaaatacaaacccatacaatattttttcagaaaaatgaatagaaaaaaaccca |
17370972 |
T |
|
| Q |
101 |
aacacaaatccttgagatccaatggattacatcaatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaagaatcaaaacccactgttcc |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
17370973 |
aacacaaatccttgagacccaatggattacatcaatgagttgaaagcaaagattgaaaatttagaattagtgcaacaaaagaatcaaaacccactattcc |
17371072 |
T |
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| Q |
201 |
catctcttctcacacggttccaatttctttgttccaatccctctcgttttttcatcgttcttctcacactgttccgatttctacaccctcattttttcag |
300 |
Q |
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| T |
17371073 |
gatctcttctcacacggttccaatttctttgttccaatccctctcg-tttttcatcgttcttctcacattgttccgatttctacaccctca-tttttcag |
17371170 |
T |
|
| Q |
301 |
ttttgatttgtgcatatacaacacacaagtttcgatttgttccattcatctcact |
355 |
Q |
| |
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||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
17371171 |
tttcgatttgtgcatatacaacacacaagtttctatttgttccattcatctcact |
17371225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 202 - 355
Target Start/End: Complemental strand, 42363337 - 42363185
Alignment:
| Q |
202 |
atctcttctcacacggttccaatttctttgttccaatccctctcgttttttcatcgttcttctcacactgttccgatttctacaccctcattttttcagt |
301 |
Q |
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||||||||||||||||||||||||||| |||||||||| | | ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
42363337 |
atctcttctcacacggttccaatttctccgttccaatcctttttgttttctcatcgttcttctcacactgttccgatttcttcaccctcat-ttttcagt |
42363239 |
T |
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| Q |
302 |
tttgatttgtgcatatacaacacacaagtttcgatttgttccattcatctcact |
355 |
Q |
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|| |||||||| ||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
42363238 |
ttcgatttgtgtatatacaacacacaaattttgatttgttccattcatctcact |
42363185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 9213131 - 9213073
Alignment:
| Q |
123 |
tggattacatcaatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
181 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |
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| T |
9213131 |
tggattacatcaatgagttaaaatcaaagattgaagatttagaatcagtgcaacaaaag |
9213073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 9194901 - 9194957
Alignment:
| Q |
125 |
gattacatcaatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
181 |
Q |
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||||||||||||||||| ||||||||||| ||| ||||| ||| || |||||||||| |
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| T |
9194901 |
gattacatcaatgagttaaaagcaaagatcgaagatttaaaattagggcaacaaaag |
9194957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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