View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21634_low_1 (Length: 449)
Name: NF21634_low_1
Description: NF21634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21634_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Complemental strand, 1587292 - 1586854
Alignment:
| Q |
1 |
tccgccgcacttttcttctctctctccctcaaattcaaatcaccaccgtcgtctcttcccatagtcctcaccgtgaaacagtggaatcgacggcggagag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1587292 |
tccgccgcacttttcttctctctctccctcaaattcaaatcaccaccgtcgtctcttcccatagtcctcaccgtgaaacagtggaatcgacggcggagag |
1587193 |
T |
|
| Q |
101 |
agaataaaatttccaaaaattcatccaatattgtggaaattagggttagggtttatgcaaatggtgatgtgtatgaaggtgaaatgaagaatgagaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
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| T |
1587192 |
agaataaaatttccaaaaattcatccaatattgtggaaattagggttagggtttatgcaaatggtgatgtgtatgaaggtgaaatgaagaatgacaggag |
1587093 |
T |
|
| Q |
201 |
ttgtgggagtggggtttattactataatatgagtggaagatatgaaggggattgggttgatgggaaatatgaaggttttggtgttgagagttggagtaag |
300 |
Q |
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| T |
1587092 |
ttgtgggagtggggtttattactataatatgagtggaagatatgaagggaattgggttgacgggaaatatgaaggttttggtgttgagagttggagtaag |
1586993 |
T |
|
| Q |
301 |
ggaagtaggtataagggtatgtatagagatggattgagaaatgggtttggtgtttatagattttatactggagatgtttatgctggtgaatggttgaatg |
400 |
Q |
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| T |
1586992 |
ggaagtaggtataagggtatgtatagagatggattgagaaatgggtttggtgtttatagattttatactggagatgtttatgctggtgaatggttgaatg |
1586893 |
T |
|
| Q |
401 |
gacagagtcatggtagtggtgttcatacttgtgatgatg |
439 |
Q |
| |
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| T |
1586892 |
gacagagtcatggtagtggtgttcatacttgtgatgatg |
1586854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 195 - 439
Target Start/End: Complemental strand, 17303829 - 17303585
Alignment:
| Q |
195 |
gaagtgttgtgggagtggggtttattactataatatgagtggaagatatgaaggggattgggttgatgggaaatatgaaggttttggtgttgagagttgg |
294 |
Q |
| |
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|||||||| |||||||| |||||||| |||| ||||||||| || ||||||||||||||| ||||||||| ||||| || | |||||| |||| ||| |
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| T |
17303829 |
gaagtgttcagggagtggtgtttattattatagtatgagtgggaggtatgaaggggattggattgatgggaggtatgatgggtatggtgtggagacatgg |
17303730 |
T |
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| Q |
295 |
agtaagggaagtaggtata-agggtatgtatagagatggattgagaaatgggtttggtgtttatagattttatactggagatgtttatgctggtgaatgg |
393 |
Q |
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| T |
17303729 |
gcaaggggaagtcgttatagagggcaa-tatcgacaaggattgagacatgggtttggtgtttataggttttatactggggatgtttatactggagaatgg |
17303631 |
T |
|
| Q |
394 |
ttgaatggacagagtcatggtagtggtgttcatacttgtgatgatg |
439 |
Q |
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| T |
17303630 |
tctaatggacagagtcatgggtgcggtgttcatacttgtgaagatg |
17303585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 208 - 425
Target Start/End: Complemental strand, 24239069 - 24238852
Alignment:
| Q |
208 |
agtggggtttattactataatatgagtggaagatatgaaggggattgggttgatgggaaatatgaaggttttggtgttgagagttggagtaagggaagta |
307 |
Q |
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||||| |||||| | ||| || ||||||||||||||||||| |||||||||||||| |||||||| |||| ||| |||| || ||| || |||||||| |
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| T |
24239069 |
agtggagtttatcattattatgtgagtggaagatatgaaggtgattgggttgatggaaaatatgatggttatggaattgaaagctgggctaggggaagta |
24238970 |
T |
|
| Q |
308 |
ggtataagggtatgtatagagatggattgagaaatgggtttggtgtttatagattttatactggagatgtttatgctggtgaatggttgaatggacagag |
407 |
Q |
| |
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| ||||||||| |||| | | || |||||| |||| | |||||||||||||||||||||||| ||| |||| |||| |||||||| ||||||||||| |
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| T |
24238969 |
gatataagggttgttataaacaaggtttgagacatggttatggtgtttatagattttatactggtgattgttattctggggaatggtttaatggacagag |
24238870 |
T |
|
| Q |
408 |
tcatggtagtggtgttca |
425 |
Q |
| |
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||||||| ||||||||| |
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| T |
24238869 |
tcatggttttggtgttca |
24238852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 432
Target Start/End: Complemental strand, 32693777 - 32693579
Alignment:
| Q |
234 |
tggaagatatgaaggggattgggttgatgggaaatatgaaggttttggtgttgagagttggagtaagggaagtaggtataagggtatgtatagagatgga |
333 |
Q |
| |
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||||||||||||||| |||||||||||||| | |||||| || | ||| ||||||||||| || || ||||| ||||||||| ||||||| | ||| |
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| T |
32693777 |
tggaagatatgaaggtgattgggttgatggaagatatgatggatatggaattgagagttgggctagagggagtagatataagggtcagtatagaaaagga |
32693678 |
T |
|
| Q |
334 |
ttgagaaatgggtttggtgtttatagattttatactggagatgtttatgctggtgaatggttgaatggacagagtcatggtagtggtgttcatacttgt |
432 |
Q |
| |
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| T |
32693677 |
atgagacatggttatggtgtttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatggtatgggtcttcaaacttgt |
32693579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 409
Target Start/End: Original strand, 13145285 - 13145373
Alignment:
| Q |
321 |
gtatagagatggattgagaaatgggtttggtgtttatagattttatactggagatgtttatgctggtgaatggttgaatggacagagtc |
409 |
Q |
| |
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|||||||||||| |||||| || |||||| |||||||||||||| |||| | ||| |||||||||||||||||||| ||||||||| |
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| T |
13145285 |
gtatagagatggcttgagacataagtttggggtttatagattttacactgagggtgtctatgctggtgaatggttgaacagacagagtc |
13145373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 41090403 - 41090311
Alignment:
| Q |
195 |
gaagtgttgtgggagtggggtttattactataatatgagtggaagatatgaaggggattgggttgatgggaaatatgaaggttttggtgttga |
287 |
Q |
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|||||||| |||||||| |||||| | | | ||||||||||||||| |||||| |||||| ||||||| || ||||| |||||||||||||| |
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| T |
41090403 |
gaagtgttcagggagtggtgtttatcattttcatatgagtggaagatttgaaggtgattggattgatggaaagtatgatggttttggtgttga |
41090311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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