View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21634_low_16 (Length: 215)
Name: NF21634_low_16
Description: NF21634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21634_low_16 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 44575558 - 44575353
Alignment:
| Q |
10 |
catcatcaactcttgtttttgacaaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
109 |
Q |
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| T |
44575558 |
catcatcaactcttgtttttgacaaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
44575459 |
T |
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| Q |
110 |
agaacattttgaagtgttgagttcttaaccaataattgccagagaaatggagatactttatttttaagttaggacatacaacaaaatccatcaaagaaat |
209 |
Q |
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| T |
44575458 |
agaacattttgaagtgttgagttcttaaccaataattgccagacaaatggagatactttatttttaagttaggacatacaacaaaatccatcaaagaaat |
44575359 |
T |
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| Q |
210 |
agaatt |
215 |
Q |
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|||||| |
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| T |
44575358 |
agaatt |
44575353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 32785711 - 32785575
Alignment:
| Q |
33 |
aaattcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaagagaacattttgaagtgttgagtt |
132 |
Q |
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| T |
32785711 |
aaattgacaaataccttcttcagatatgttatagcaatagctcaaatcaagtagttgcaaattggaaaaaatagaagaaaacatcctgatgctttcatct |
32785612 |
T |
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| Q |
133 |
cttaaccaataattgccagagaaatggagatacttta |
169 |
Q |
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| T |
32785611 |
cttaaccaataattgcgagccaaatggagaaacttta |
32785575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 1037597 - 1037524
Alignment:
| Q |
36 |
ttcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
109 |
Q |
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| T |
1037597 |
ttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaag |
1037524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 12121371 - 12121317
Alignment:
| Q |
55 |
gatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
109 |
Q |
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| T |
12121371 |
gatatgttatagcaaaaactcaaatcaagcaattgcaaattggggaaaacggaag |
12121317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 55908661 - 55908588
Alignment:
| Q |
36 |
ttcacaaatatcttctatggatatgtaatagcaaaagctcaaatcaagtaattgcaaattgggaaaaatggaag |
109 |
Q |
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| T |
55908661 |
ttcacaaataccttcttcagatatgttatggcaggagctcaaatcaagaaattgcaaattggggaaaatggaag |
55908588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 18315171 - 18315121
Alignment:
| Q |
71 |
agctcaaatcaagtaattgcaaattgggaaaaatggaagagaacattttga |
121 |
Q |
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| T |
18315171 |
agctcaaatcaagcaactgcaaattggggaaaatggaagaaaatattttga |
18315121 |
T |
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