View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21634_low_3 (Length: 404)
Name: NF21634_low_3
Description: NF21634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21634_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 1587288 - 1587437
Alignment:
| Q |
1 |
gcggagaaagcgaaagcagataggaaattaaagaagaaagagtgagtaggtggggatagtaagnnnnnnnnnnnngggagggaaagaaggaggattaaac |
100 |
Q |
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| T |
1587288 |
gcggagaaagcgaaagcagataggaaattaaagaagaaagagtgagtaggtggggatagtaagaaaaagaaaaaagggagggaaagaaggaggattaaac |
1587387 |
T |
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| Q |
101 |
ggaaacgatggcggagacgacggagtgcggcggaggagacggcggagaga |
150 |
Q |
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| T |
1587388 |
gggaacgatggcggagacgacggagtgcggcggaggagacggcggagaga |
1587437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 1587519 - 1587566
Alignment:
| Q |
232 |
gatgatttggagggtttgattttaaaattagggttgttaattttagga |
279 |
Q |
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| T |
1587519 |
gatgatttggagggtttgattttaaaattagggttgttaattttagga |
1587566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 1587632 - 1587673
Alignment:
| Q |
345 |
aagtttatggtgatgaaagagattagggttgaaatcggaaga |
386 |
Q |
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| T |
1587632 |
aagtttatggtgatgaaagagattagggttgaaatcggaaga |
1587673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 24317595 - 24317627
Alignment:
| Q |
235 |
gatttggagggtttgattttaaaattagggttg |
267 |
Q |
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| T |
24317595 |
gatttggagggtttgattttgaaattagggttg |
24317627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 25438474 - 25438506
Alignment:
| Q |
235 |
gatttggagggtttgattttaaaattagggttg |
267 |
Q |
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| T |
25438474 |
gatttggagggtttgattttgaaattagggttg |
25438506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 5410823 - 5410791
Alignment:
| Q |
235 |
gatttggagggtttgattttaaaattagggttg |
267 |
Q |
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| T |
5410823 |
gatttggagggtttgattttgaaattagggttg |
5410791 |
T |
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