View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21634_low_8 (Length: 350)
Name: NF21634_low_8
Description: NF21634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21634_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 30747947 - 30748067
Alignment:
| Q |
130 |
ggtcacttacatatacaataaaatgttccttaaaaacatattcaataaaatgaaggtcccaaccccggccttgcatataataatgcagtaacatatcaat |
229 |
Q |
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| T |
30747947 |
ggtcacttacatatacaataaaatgtcccttaaaaacatattcaataaaatgaaggttcgaatcccggccttgcatataataatgcagtatcataccaat |
30748046 |
T |
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| Q |
230 |
tgagctgtgcttacgggactc |
250 |
Q |
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|||||| |||||||||||||| |
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| T |
30748047 |
tgagctatgcttacgggactc |
30748067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 30747832 - 30747899
Alignment:
| Q |
14 |
atattcaaggtcaatccaatacatttagatatcaaaaacgaacattaaaatgagatattttatgtaag |
81 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
30747832 |
atattcaaggtcaatccaatacatttacatatcaaaaacgaacattaaaatgagatattttatgtaag |
30747899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Original strand, 30748134 - 30748167
Alignment:
| Q |
317 |
gagggaggtgatgagcagaatatggggtgtaact |
350 |
Q |
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| T |
30748134 |
gagggaggtaatgagcagaatatggggtgtaact |
30748167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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