View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21635_high_17 (Length: 238)
Name: NF21635_high_17
Description: NF21635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21635_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32801385 - 32801611
Alignment:
| Q |
1 |
ttgttgctggtgattctgtgctgtatatctggcatgtgattttattatgtcatgcttttcaaagtggacactttatcaatgctctcgacctcattaattt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||||||||| || ||| ||||| ||||| |||||||||| |
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| T |
32801385 |
ttgttgctggtgattctgtgctgtttatctggcaagtgattttattatatcctgcttttcaaagtggacgct--atctatgctttcgacttcattaattt |
32801482 |
T |
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| Q |
101 |
ggtctattgattcaccttggatatatcatgctttcaatactaaaacattcttcatgacaagtggttcaggcttagagaagtgttcgttgattcgannnnn |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
32801483 |
ggtctattcattcaccttggatatatcatgctttcaatactaaaacattcttaatgataagtgcttcaggcttagagaagtgttcgttgattcgattttt |
32801582 |
T |
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| Q |
201 |
nnncatcttcttactttattatgatgatg |
229 |
Q |
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||||||||||||||| |||||||||| |
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| T |
32801583 |
tttcatcttcttactttactatgatgatg |
32801611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 5909859 - 5909693
Alignment:
| Q |
1 |
ttgttgctggtgattctgtgctgtatatctggcatgtgattttattatgtcatgcttttcaaagtggacactttatcaatgctctcgacctcattaattt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||| ||||||||||| |||| || |||||||||| |||||||||| |
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| T |
5909859 |
ttgttgctggtgattctgtgctgtttatctggcaagtgattttattgtgtcctgcttatcaaagtggacgctttctc--tgctctcgacatcattaattt |
5909762 |
T |
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| Q |
101 |
ggtctattgattcaccttggatatatcatgctttcaatactaaaacattcttcatgacaagtggttcag |
169 |
Q |
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| T |
5909761 |
gttctattcctttaccttggatctgtcatgttttcaatactaaaacattcttactgacaagtgcttcag |
5909693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31785287 - 31785061
Alignment:
| Q |
1 |
ttgttgctggtgattctgtgctgtatatctggcatgtgattttattatgtcatgcttttcaaagtggacactttatcaatgctctcgacctcattaattt |
100 |
Q |
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|||||||||| ||||||||| ||| || |||||| ||||||||||||| || ||||||||||||||||| |||| | |||||||||||||||||||||| |
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| T |
31785287 |
ttgttgctggcgattctgtgatgtttacctggcaagtgattttattatatcctgcttttcaaagtggacgctttct--atgctctcgacctcattaattt |
31785190 |
T |
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| Q |
101 |
ggtctattgattcaccttggatatatcatgctttcaatactaaaacattcttcatgacaagtggttcaggcttagagaagtgttcgttgattcgannnnn |
200 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| | |
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| T |
31785189 |
ggtctattcatccaccttggatatatcatgctttcaatactaaaacattcttaatgacaagtgctttaggcttagagaagtgttcgttgattcaattttt |
31785090 |
T |
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| Q |
201 |
nnncatcttcttactttattatgatgatg |
229 |
Q |
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|||||||||||||||||||||||||| |
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| T |
31785089 |
tttcatcttcttactttattatgatgatg |
31785061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 17759246 - 17759321
Alignment:
| Q |
117 |
ttggatatatcatgctttcaatactaaaacattcttcatgacaagtggttcaggcttagagaagtgttcgttgattc |
193 |
Q |
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| T |
17759246 |
ttggatttgtcatgttttcaatactaaaacattcttactgacaagtgcttcaggcttaaagaagt-ttcgttgattc |
17759321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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