View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21635_high_7 (Length: 465)
Name: NF21635_high_7
Description: NF21635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21635_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 446
Target Start/End: Original strand, 2786164 - 2786601
Alignment:
| Q |
9 |
acatcatcaactttaacatgaatttgatttgaaggcaagtttgttgttccggaaggactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaa |
108 |
Q |
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| T |
2786164 |
acatcgtcaactttaacatgaatttgatttgaaggcaagtttgttgttccggaaggactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaa |
2786263 |
T |
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| Q |
109 |
caagagggggtttcgcatcaacaggtggattgacagctccagcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaat |
208 |
Q |
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| T |
2786264 |
caagagggggtttagcatcaaccggtggattgacagctccagcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaat |
2786363 |
T |
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| Q |
209 |
agaaaactgcggaaatgctttagcaacatcttcagcatcataaaactggttacctgattccgagtcaatggattcattcttcttgggaacatatattggt |
308 |
Q |
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| T |
2786364 |
agaaaactgcggaaatgctttagcaacatcttcagcatcataaaactggttacctgattccgagtcaatggattcattcttcttgggaacatatattggt |
2786463 |
T |
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| Q |
309 |
ctcttcaatggataaggattactggctgccacaagaatacagtgcattggcatatcaacattcttttgattagggctttcactttgagacggggagaaca |
408 |
Q |
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| T |
2786464 |
ctcttcaatggataaggattactggctgccacaagaatacagtgcattggcatatcaacattcttttgattagggctttcactttgagacggggagaaca |
2786563 |
T |
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| Q |
409 |
tcatcaaagcttcagcaagcccttcagcgacagcggtg |
446 |
Q |
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| T |
2786564 |
tcatcaaagcttcagcaagcccttcagcgacagcggtg |
2786601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 22517262 - 22517146
Alignment:
| Q |
294 |
ggaacatatattggtctcttcaatggataaggattactggctgccacaagaatacagtgcattggcatatcaacattcttttgattagggctttcacttt |
393 |
Q |
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|||||||||| ||| ||| |||||| ||||||||||||||||||||||| ||||||||||| | |||| ||||||| ||||| ||| | |||||| |
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| T |
22517262 |
ggaacatataccggtgtctgcaatgggtaaggattactggctgccacaaggatacagtgcatgttcgtatccacattctgctgatttaggcctccacttt |
22517163 |
T |
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| Q |
394 |
gagacggggagaacatc |
410 |
Q |
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| T |
22517162 |
gagaaggggggaacatc |
22517146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 22517521 - 22517462
Alignment:
| Q |
150 |
gcattgtagatggctttgattttgggaagatttcttgggcagatgacagatagagaaata |
209 |
Q |
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| T |
22517521 |
gcattgtagatggctttaattttgggaagttgttttgggcagacgaccgatagagaaata |
22517462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 22517356 - 22517280
Alignment:
| Q |
215 |
ctgcggaaatgctttagcaacatcttcagcatcataaaactggtt-acctgattccgagtcaatggattcattcttct |
291 |
Q |
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| T |
22517356 |
ctgcggaaacgctttagcaacagcttcagcatcatataactggttcacttggtt-tgagtcaatggattcagtcttct |
22517280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 22518281 - 22518232
Alignment:
| Q |
64 |
gactcaaggcagtgcgggcttccctgaaaccttctgatatcaaaacaaga |
113 |
Q |
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| T |
22518281 |
gactcaaggcactgcgggcttccctaaaaccttctgatattaaaataaga |
22518232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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