View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21635_high_9 (Length: 343)
Name: NF21635_high_9
Description: NF21635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21635_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 28267439 - 28267781
Alignment:
| Q |
1 |
aaatgagagttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttcnnnnnnn--cctttgaaatattaaatggacataga |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28267439 |
aaatgagagttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttctttttttttcctttgaaatattaaatggacataga |
28267538 |
T |
|
| Q |
99 |
tttcaaagtaatcataaattatgatgtttatgcacgtattcctcaatccaaagagacacaataaacatttatttttcctgtcagactgacacacacactg |
198 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267539 |
tttcaaagcaatcataaattatgatgtttatgcatgtattcctcaatccaaagagacacaataaacatttatttttcctgtcagactgacacacacactg |
28267638 |
T |
|
| Q |
199 |
actgatttgttgacactatgaggtggctaaagttcatttttcaatgaatagaaatttgatgcagtgtcgcgatatggtatagaaagcggtggtttgagtt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28267639 |
actgatttgttgacactatgaggtggctaaagttcatttttcaatgaatagaaatttgatgcagtgtcgcgatatggtatagaaagcggtggtttgagtt |
28267738 |
T |
|
| Q |
299 |
ttttcagtgacatagcacttctactaattgatgatgtccatct |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28267739 |
ttttcagtgacatagcacttctactaattgatgaagtccatct |
28267781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University