View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21635_low_1 (Length: 720)
Name: NF21635_low_1
Description: NF21635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21635_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 1 - 720
Target Start/End: Original strand, 39981668 - 39982387
Alignment:
| Q |
1 |
gttcgattaacaagatccagtttagggagttctgggactgtatttcagaccaaagctttgatactaggctcaaaatattctttgacatgtaattctttgt |
100 |
Q |
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| T |
39981668 |
gttcgattaacaagatccagtttagggagttctgggactgtatttcagaccaaagctttgatactaggctcaaaatattctttgacatgtaattctttgt |
39981767 |
T |
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| Q |
101 |
ttagttaatgtaagcgtcaaatatttgttgaatgctccataaacatatcaccaacattgattttgattacagggttgacaaagatgcagatggaagaatc |
200 |
Q |
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| T |
39981768 |
ttagttaatgtaagcgtcaaatatttgttgaatgctccataaaaatatcaccaacattgattttgattacagggttgacaaagatgcagatggaagaatc |
39981867 |
T |
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| Q |
201 |
actgaggaagagataaaaaatgtatggtacttttaatttaacactaaataatctaaatatgagttgcacagtatgcactgaactttatttttggtgattt |
300 |
Q |
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| T |
39981868 |
accgaggaagagataaaaaatgtatggtacttttaatttaacactaaataatctaaatatgagttgcacagtatgcactgaactttatttttggtgattt |
39981967 |
T |
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| Q |
301 |
ttcaacagtnnnnnnnttagtaaagtagtttttaatcagccaatttttgcctgagtgattttgtgttatttgatcatattttatgtaattctgcttcaga |
400 |
Q |
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| T |
39981968 |
ttcaacagtaaaaaaattagtaaagtagtttttaatcagccaatttttgcctgagtgattttgtgttatttgatcatattttatgtaattctgcttcaga |
39982067 |
T |
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| Q |
401 |
ttatatgcctgagtgccactgccaacaaactgtcaaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccggatgacac |
500 |
Q |
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| T |
39982068 |
ttatatgcctgagtgccactgccaacaaactgtcaaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccggatgacac |
39982167 |
T |
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| Q |
501 |
aggatatatcttggtaattaaatgacagtatctaaactgtagtctccagattaaaataactatttcaatattatagaattgtgaccttactcatttgacc |
600 |
Q |
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| T |
39982168 |
aggatatatcttggtaattaaatgacagtatctaaattgtagtctccagattaaaataactatttcaatattatagaattgtgaccttactcatttgacc |
39982267 |
T |
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| Q |
601 |
atattttaacagataggcaatctcgagactctcttattacatggaccagaagagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaa |
700 |
Q |
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| T |
39982268 |
atattttaacagataggcaatctcgagactctcttattacatggaccagaagagactacaaggggagaaagtaagtacctgagccaaatgctaagccaaa |
39982367 |
T |
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| Q |
701 |
agcttaggcctacatttgag |
720 |
Q |
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| T |
39982368 |
agcttaggcctacatttgag |
39982387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 395 - 520
Target Start/End: Original strand, 44913683 - 44913808
Alignment:
| Q |
395 |
ttcagattatatgcctgagtgccactgccaacaaactgtcaaatatccagaaacaagcagaggaatatgcggctttgatcatggaagaactagacccgga |
494 |
Q |
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|||||||||| ||||| ||||||||| | |||||||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||||||||| || |
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| T |
44913683 |
ttcagattatttgccttagtgccactacaaacaaactctcaaacatacagaagcaggcagaggaatatgctgctttgatcatggaagaactagaccctga |
44913782 |
T |
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| Q |
495 |
tgacacaggatatatcttggtaatta |
520 |
Q |
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| T |
44913783 |
tgatactggatttatcatggtaatta |
44913808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 664 - 706
Target Start/End: Original strand, 44914329 - 44914371
Alignment:
| Q |
664 |
ggagaaagtaagtacctgagccaaatgctaagccaaaagctta |
706 |
Q |
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| T |
44914329 |
ggagatagtaagtacctgagccaaatgctaagcataaagctta |
44914371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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