View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21635_low_10 (Length: 300)
Name: NF21635_low_10
Description: NF21635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21635_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 1490333 - 1490055
Alignment:
| Q |
1 |
aaatggtgtggatatcaggacattgagatcaggaatgtgcttctcaagttctggcaacatgacaaaaattagtcataagttcaagcaatcacaaacttga |
100 |
Q |
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| T |
1490333 |
aaatggtgtggatatcaggacattgagatcaggaatgtgcttctcaagttctggcaacatgacaaaaattagtcataagttcaagcaatcacaaacttga |
1490234 |
T |
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| Q |
101 |
gatattatctgcatattcttaattaaatatatttgtttagttactgcatagacgtaataagagggtgtatcaatttggcataatgctaaccagaattgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1490233 |
gatattatctgcatattcttaattaaatatatttgtttagttactgcatagacgtaataagagggtgtatcaatttggcataatgctaaccagaattgag |
1490134 |
T |
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| Q |
201 |
tccttctttgtcatcagtgacaatgtattcatgtccttgtgattccaaccactcgcgtatacctaatgctccttcaaca |
279 |
Q |
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| T |
1490133 |
tccttctttgtcatcagtgacaatgtattcatgtccttgtgattccaaccactcgcgtatacctaatgctccttcaaca |
1490055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 159 - 279
Target Start/End: Complemental strand, 1494952 - 1494832
Alignment:
| Q |
159 |
aagagggtgtatcaatttggcataatgctaaccagaattgagtccttctttgtcatcagtgacaatgtattcatgtccttgtgattccaaccactcgcgt |
258 |
Q |
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||||||||| || |||||| || ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |
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| T |
1494952 |
aagagggtggattaatttgtcaaaattctaaccagaatcaggtccttctttgtcatcagtgacaatgtattcatgtccttgtgattcaagccactcacgt |
1494853 |
T |
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| Q |
259 |
atacctaatgctccttcaaca |
279 |
Q |
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| T |
1494852 |
atacctaatgctccttcaaca |
1494832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1495065 - 1495007
Alignment:
| Q |
1 |
aaatggtgtggatatcaggacattgagatcaggaatgtgcttctcaagttctggcaaca |
59 |
Q |
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||||||||| ||||||||||||| ||||| |||||||||||||| |||||||| |||| |
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| T |
1495065 |
aaatggtgtagatatcaggacatgcagatcgggaatgtgcttctcgagttctggtaaca |
1495007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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