View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21635_low_16 (Length: 266)
Name: NF21635_low_16
Description: NF21635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21635_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 41823773 - 41823976
Alignment:
| Q |
1 |
ttagtgatgattgatttcttacaaccataccttcacagtttatatagtaaaaagtaacatgcgtac-taagacctaattcaaatgacaaaaatatgtcaa |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
41823773 |
ttagtgatgattgatttcttacaaccataccttcacagtttatatagcaaaaagtaacatgcgtacctaattcctaattcaaatgacaaaaatatgtcaa |
41823872 |
T |
|
| Q |
100 |
atatattaagtgacaaaaatgtaacaataagaaattacaactaacaagcattatccaaatataaaaag-aaacacaaattaatattgaagcctaaaaaag |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
41823873 |
atatattaagtgacaaaaatgtaacaataagaaattacaactaacaagcattatccaaatataaaaggaaaacacaaattaatattgaagcctaaaaaag |
41823972 |
T |
|
| Q |
199 |
aaag |
202 |
Q |
| |
|
|||| |
|
|
| T |
41823973 |
aaag |
41823976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 41823600 - 41823549
Alignment:
| Q |
197 |
agaaagagacctagttagccttgcatcatacacacttgatgttgctcataga |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41823600 |
agaaagagacctagttagccttgcatcatacacacttgatgttgctcataga |
41823549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University