View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21635_low_2 (Length: 719)

Name: NF21635_low_2
Description: NF21635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21635_low_2
NF21635_low_2
[»] chr4 (1 HSPs)
chr4 (20-690)||(6887735-6888410)


Alignment Details
Target: chr4 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 20 - 690
Target Start/End: Complemental strand, 6888410 - 6887735
Alignment:
Q  20 taactattgtgttataaccacaatttcaatgaagagcttttctatttccattgtcaatgagaaaagaaaatgaaagatagtcttctaattttggaacaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6888410 taactattgtgttataaccacaatttcaatgaagagcttttctatttccattgtcaatgagaaaagaaaatgaaagatagtcttctaattttggaacaaa 6888311  T
Q  120 actaatcccttgtactgtagttcattattctgcatgtggacaacagtacttgttcaaattgacatcatcttctgatatacacatcaaagtaacgtggaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6888310 actaatcccttgtactgtagttcattattctgcatgtggacaacagtacttgttcaaattgacatcatcttctgatatacacatcaaagtaacgtggaaa 6888211  T
Q  220 ttaatcactgtttcagaatttcaaatagtgaaagagagagaatgtaccgtgagtaaaaaattgttttaatttac-----actatcattctgcatggtccg 314  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||     |||||||||||||||| ||||    
T  6888210 ttaatcactgtttcagaatttcaaatagtgaaagagagagaaagtaccgtgagtaaaaaattgttttaaattacggattactatcattctgcatgatccg 6888111  T
Q  315 tctttcacgcagtcagtacatcgatgatcgttcgatcaaaattaaacggtttaaataaggttgattttaattctaataatataaataaaaatagagaaca 414  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6888110 tctttcacgcagtcaatacatcgatgatcgttcgatcataattaaacagtttaaataaggttgattttaattttaataatataaataaaaatagagaaca 6888011  T
Q  415 tgaatctcgactacatttgttcttgatgaaccgatatcgatgtctagactgcgtgaatgcgagaaattgttgattgcatggaataaagtgagatagctca 514  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6888010 tgaatctcgacgacatttgttcttgatgaaccgatatcgatgtctaaactgcgtgaatgcgagaaattgttgattgcatggaataaagtgagatagctca 6887911  T
Q  515 tttccctatccactacttcactgacattctatcagacagaaaataaactaactcaagaaatcactgattgagcttttcacatccgcataaagtcagatac 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6887910 tttccctatccactacttcactgacattctatcagacagaaaataaactaactcaagaaatcactgattgagcttttcacatccgcataaagtcagatac 6887811  T
Q  615 atcccaacattgattcccttttcctttgtaattattctatcactcaaatccataagcttcacttcactctttcacc 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6887810 atcccaacattgattcccttttcctttgtaattattctatcactcaaatccataagcttcacttcactctttcacc 6887735  T

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