View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21635_low_3 (Length: 690)
Name: NF21635_low_3
Description: NF21635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21635_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 28683401 - 28683667
Alignment:
| Q |
17 |
cttttttcgcatatgaccaaaaacaattgtttcggacaaagctatttcaacatcaactgacccatgctttagatactatgggaaaatgagaagaaaggga |
116 |
Q |
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| T |
28683401 |
ctttttccgcatatgaccaaaaacaattgtttcggacaaagctattttaacatcaactgacccatgctttagatactatgggaaaatgagaagaaaggga |
28683500 |
T |
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| Q |
117 |
caaagaaatatacaattattacgagcnnnnnnnttaaagagcgcga---catcnnnnnnnnnnnnnnnnnngagaagtcgtctctaataaaagaaggtaa |
213 |
Q |
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| T |
28683501 |
caaagaaatatacaattattacgagcaaaaaaattaaagagcgcgaaatcattattattattattattattgagaagtcgtctctaataaaagaaggtaa |
28683600 |
T |
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| Q |
214 |
agaagcccaccacatagagccttggatatcatggccatgattagcaagcttgtttgcacatccgtaa |
280 |
Q |
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| T |
28683601 |
agaagcccaccacatagagccttggatatcatggccatgattagcaagcttgtttgcacatccgtaa |
28683667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 302 - 430
Target Start/End: Original strand, 28683666 - 28683796
Alignment:
| Q |
302 |
aatgaggagtgggggccggtgcaccctttgggcgagttctgtatgcatctctcttgagttgttgcttttgtttc--tgtcaaataggacgtgaaagtagg |
399 |
Q |
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| T |
28683666 |
aatgaggagtggggggcggtgcaccctttgagcgagttctgtatgcatttctcttgagttgttgcttttatttctttgtcaagtaggacgtgaaagtagg |
28683765 |
T |
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| Q |
400 |
atcaacttcatttcttgcatatctcgaattt |
430 |
Q |
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| T |
28683766 |
atcaacttcatttcttgcatatctcgaattt |
28683796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 33172902 - 33172963
Alignment:
| Q |
212 |
aaagaagcccaccacatagagccttggatatcatggccatgattagcaagcttgtttgcaca |
273 |
Q |
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| T |
33172902 |
aaagaagtcgaccacatagagccttggatagcgtgactatgattggcaagcttgtctgcaca |
33172963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 298 - 472
Target Start/End: Original strand, 14114817 - 14114994
Alignment:
| Q |
298 |
tatcaatgaggagtgggggccggtgcaccctttgggcgagttctgtatgcatctctcttgagttgttgcttttgtttct--gtcaaataggacgtgaaag |
395 |
Q |
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| T |
14114817 |
tatcattgaggagtgggggatggtgcacccttataacgacttttgcatgcatctctcttgagttgttgtttttgtttctttgtctaataaggcgtgaaag |
14114916 |
T |
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| Q |
396 |
taggatcaacttcattt-cttgcatatctcgaatttgcataaacaactcaacttccttttgtaacaatggattgctat |
472 |
Q |
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| T |
14114917 |
gaggtttagctccattttctttcatatcacgaatttgcataaataacttcactcccttttgtaacaacggattgctat |
14114994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 341 - 480
Target Start/End: Original strand, 19900702 - 19900844
Alignment:
| Q |
341 |
tgtatgcatctctcttgagttgttgcttttgtttc--tgtcaaataggacgtgaaagtaggatcaacttca-tttcttgcatatctcgaatttgcataaa |
437 |
Q |
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|||| ||||||||||||||||||||||| |||||| ||||||||||| | ||||| | | ||| || || |||||||| |||||||||||||||| || |
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| T |
19900702 |
tgtaggcatctctcttgagttgttgcttctgtttctttgtcaaatagggcccgaaaggaagttcagctccattttcttgcttatctcgaatttgcatgaa |
19900801 |
T |
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| Q |
438 |
caactcaacttccttttgtaacaatggattgctatgtggagga |
480 |
Q |
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| T |
19900802 |
caactcaacttccttatgtgacaacgaaccgctatgtggagga |
19900844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 474
Target Start/End: Original strand, 25781468 - 25781532
Alignment:
| Q |
410 |
tttcttgcatatctcgaatttgcataaacaactcaacttccttttgtaacaatggattgctatgt |
474 |
Q |
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||||||||||||| | |||| |||||| |||||| |||||||| |||||||||||||| |||||| |
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| T |
25781468 |
tttcttgcatatcacaaattcgcataagcaactcgacttccttctgtaacaatggatttctatgt |
25781532 |
T |
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