View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21635_low_6 (Length: 486)
Name: NF21635_low_6
Description: NF21635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21635_low_6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 60 - 486
Target Start/End: Original strand, 45756907 - 45757334
Alignment:
| Q |
60 |
aatattcttttcgatggtacttttgtcaataatgtttggttcttctcacatgaagatttcaccttattagatattcgcattttgcgatcattattaactt |
159 |
Q |
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| T |
45756907 |
aatattcttttcgatggtacttttgtcaataatgtttggttcttctcacattaagatttcaccttattagatattcgcattttgccaccattattaactt |
45757006 |
T |
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| Q |
160 |
attattactcttattcttttttcttctagatctttcgtatctactacaagtaacgtgctttttnnnnnnnnntggtaacataccactaattagagttcca |
259 |
Q |
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| T |
45757007 |
attattactcttattcttttttcttctagatctttcgtatctactacaagtaacgtgctttttaaaaaaaa-tggtaacataccactaattagagttcca |
45757105 |
T |
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| Q |
260 |
atggatttttatacggcaaattgttgtattgaccaccttgataagttgttgacagtagattattactactagtgaatatagaacatcttaattaacatgc |
359 |
Q |
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| T |
45757106 |
atggatttttatacggcaaattgttgtattgaccaccttgataagttgttgacagtagattactactactagtgaatatagaacatc----ttaacatgc |
45757201 |
T |
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| Q |
360 |
ataatataatatgtttccattatgttttgggcgcatgcacatgcacatgcacatagaatgatgcttcctacctta------------ctatagtggaaga |
447 |
Q |
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| T |
45757202 |
ataatataatatgtttccattatgttttgggcg------catgcacatgcacatagaatgatgcttcctaccttacatcaatataagctatagtgggaga |
45757295 |
T |
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| Q |
448 |
tttatacggtcacattttatttcgtggaaagtgattgat |
486 |
Q |
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| T |
45757296 |
tttatacggtcgcattttatttcgtggaaagtgattgat |
45757334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 45756812 - 45756869
Alignment:
| Q |
7 |
caaaggacaaaatggtactaacaaacttaaattttgggaaaacatttgctatgaatat |
64 |
Q |
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| T |
45756812 |
caaaggacaaaatggtactaacaaacttaaattttgggaaaacatttgctatgaatat |
45756869 |
T |
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