View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_high_13 (Length: 471)
Name: NF21636_high_13
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 21019140 - 21018681
Alignment:
| Q |
1 |
ctttaatattttccaccaaatcatctaagtcgacaacaccattattgaacacaatatcattccttctcttccaaaatagcccaaaccatcgcactccaaa |
100 |
Q |
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| T |
21019140 |
ctttaatattttccaccaaatcatctaagtcgacaacaccat-attgaacacaatatcattccttctcttccaaaatagcccaaaccgtcgcattccaaa |
21019042 |
T |
|
| Q |
101 |
tcaaccggaagccatgtctaagcttcttagttgacgccgtgtttgaccaacacagaaaatgagcccaaagattatgcggtgttataaagttaaattgaag |
200 |
Q |
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| T |
21019041 |
tcaaccggaagccatgtctaagcttcttagttgacgccgcgtttgaccaacacagaaaatgagcccaaagattatgcggtgttataaaattaaattgaag |
21018942 |
T |
|
| Q |
201 |
ccactgcataaccttttgccacaacctcgtaaccacctcgcaacttaagaagaggt------gcaacgccgtttcctccaaccttccacaaaaaacacaa |
294 |
Q |
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| T |
21018941 |
ccactgcataaccttttgccacaacctcgtaaccaccttgcaatgtaagaagaggtgcaagtgcaacgccgtttcctccaaccttccaaaaaaaacacaa |
21018842 |
T |
|
| Q |
295 |
gtctttgatgcatccgcatttaaaacacccctaatccctaatttcaccgttgttggtatacagtcaagtaacaaagtccacgcaaaagctaacactttag |
394 |
Q |
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| T |
21018841 |
gtctttgatgcatccgcattcaaaacacccctaatcgctagattcacccttatcggtatacggtcaagtaacaaagtccaagcaaaagctaacactttag |
21018742 |
T |
|
| Q |
395 |
acggcacccgacatctccaaagataaccaaacacatgctcctcatcttcggataaattaac |
455 |
Q |
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| T |
21018741 |
acggcacccgacacctccaaagatcaccaaacacacgctcctcatcttcggataaattaac |
21018681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 357 - 453
Target Start/End: Complemental strand, 16744201 - 16744105
Alignment:
| Q |
357 |
gtcaagtaacaaagtccacgcaaaagctaacactttagacggcacccgacatctccaaagataaccaaacacatgctcctcatcttcggataaatta |
453 |
Q |
| |
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|||||||||||| || || ||||||||||||||||||||||| | ||||| |||||||| |||||||||| |||||||||| ||||||||||| |
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| T |
16744201 |
gtcaagtaacaacgttcaagcaaaagctaacactttagacggagcgcgacacttccaaagaccaccaaacacacactcctcatctccggataaatta |
16744105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 23293457 - 23293509
Alignment:
| Q |
267 |
ttcctccaaccttccacaaaaaacacaagtctttgatgcatccgcatttaaaa |
319 |
Q |
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||||||| ||||||||| || |||||| |||| ||||||||||||||||||| |
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| T |
23293457 |
ttcctccctccttccacacaacacacaattcttcgatgcatccgcatttaaaa |
23293509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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