View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_high_20 (Length: 413)
Name: NF21636_high_20
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 45405515 - 45405812
Alignment:
| Q |
1 |
gaatgaatgagtagtgaagcaaagcaactttggttatggttactactattagtagtagtagcttcttgggtagttgagttttgaagaaaaaatcaaaact |
100 |
Q |
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| T |
45405515 |
gaatgaatgagtagtgaagcaaagcaactttggttatggttactactattagtagtagtagcttcttgggtagttgagttttgaagaaaaaatcaaaact |
45405614 |
T |
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| Q |
101 |
tgaagagttgtattgtattgtgttgttaactttgttgctaatgatggatattaacaagctaaggcaaagagagaaaaacaaaacaaaa-------tagtg |
193 |
Q |
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| T |
45405615 |
tgaagagttgtattgtattgtgttgttaactttgttgctaatgatggatattaacaagctaaggcaaagagagaaaaacaaaacaaaacaaaaaatagtg |
45405714 |
T |
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| Q |
194 |
tttattaagcgttgatttctctcttccactctttcnnnnnnnctcactatatttggaggagaaatccatgcatggaagcaaagattattattattatt |
291 |
Q |
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| T |
45405715 |
tttattaagcgttgatttctctcttccactctttctttttttctcactatatttggaggagaaatccatgcatggaagcaaagattattattattatt |
45405812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 45405845 - 45405930
Alignment:
| Q |
310 |
gagggaggatagcatgacagcacgtgtactcaactaagtatgttacgctactcttgatccaatggtttaagatttgtccacgtaag |
395 |
Q |
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| T |
45405845 |
gagggaggatagcatgacagcacgtgtactcaactaagtatgttacgctactcttgatccaatggtttaagatttatccacgtaag |
45405930 |
T |
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