View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_high_21 (Length: 403)
Name: NF21636_high_21
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 270
Target Start/End: Complemental strand, 2562158 - 2561914
Alignment:
| Q |
24 |
agctatccttatatgaaacacaagtacacattcatctgcaacacattatatgagtgcatgttaattacttcttaccattttcagtattgttactcttcta |
123 |
Q |
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| T |
2562158 |
agctatccttatatgaaacacaagtacacattcatctgcaacacattatatgagtgcttgtta----cttcttaccattttcagtattgttactcttcta |
2562063 |
T |
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| Q |
124 |
gattatttttgtttgccttt--tatacatatttcttaccattttgagttctgtttggtgtggtgtacatgttacatttgtcgtcctttgttagcagtact |
221 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2562062 |
gattatttttgtttgcctttattatacatatttcttaccattttgagttctgtttggtgtggtgtacatgttacatttgtcgtcctttgttagcagtact |
2561963 |
T |
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| Q |
222 |
tttatttcctttttatatcttgtgtatttcttgtaatggattagagtat |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2561962 |
tttatttcctttttatatcttgtgtatttcttgtaatggattagagtat |
2561914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 262 - 383
Target Start/End: Complemental strand, 2560850 - 2560729
Alignment:
| Q |
262 |
ttagagtatccatagtgtttctgatttatacaatattctttaccattnnnnnnntaacacattatacatagatttcatttatcttgccataagctttgta |
361 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2560850 |
ttagaatatccacagtgtttctgatttatacaatattctttaccattaaaaaaataacacattatacatagatttcatttatcttgccataagctttgta |
2560751 |
T |
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| Q |
362 |
cttgtagtttgtagtacacacg |
383 |
Q |
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|||||||||||||||||||||| |
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| T |
2560750 |
cttgtagtttgtagtacacacg |
2560729 |
T |
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