View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_high_26 (Length: 308)
Name: NF21636_high_26
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 289
Target Start/End: Complemental strand, 4487931 - 4487653
Alignment:
| Q |
11 |
cacagaggagctctcaaataagtttataattagcaattcggaatatttaacaacattcgctaaatgcaactttttgagaataaatatgtttttgctatat |
110 |
Q |
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| T |
4487931 |
cacagaggagctctcaaataagtttataattagcaatttggaatatttaataacttgcactaaatgcaactttttgagaataaatatgtttttgctatat |
4487832 |
T |
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| Q |
111 |
tgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgtatgt |
210 |
Q |
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| T |
4487831 |
tgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaaaggttgccgtatgt |
4487732 |
T |
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| Q |
211 |
ggattttacagtgccatatgtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgttt |
289 |
Q |
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| T |
4487731 |
ggattttacagtgccatatgcagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgttt |
4487653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 108 - 289
Target Start/End: Complemental strand, 4482855 - 4482674
Alignment:
| Q |
108 |
tattgatttggaattgttgtttatatgtggctaaacaatgatggaagacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgta |
207 |
Q |
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| T |
4482855 |
tattgattgggactttttgtttatgtttggttaaacaatgatggaagacttacgacgcttttgttggggacacggccataatagaggaaagattgaggta |
4482756 |
T |
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| Q |
208 |
tgtggattttacagtgccatatgtagaatcaggattgtcaatgatagttccgatgaagcctggagagtcagcatggatgttt |
289 |
Q |
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| T |
4482755 |
tgtggattttacattgccatatgcagaatcaggattgtcgatgatagttccattgaagacggaagattcagcatggatgttt |
4482674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 153 - 289
Target Start/End: Original strand, 34606351 - 34606487
Alignment:
| Q |
153 |
agacttatgatgctgttgttggggacatgaccataatagaggaaagattgccgtatgtggattttacagtgccatatgtagaatcaggattgtcaatgat |
252 |
Q |
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|||||||||| | ||||||||| |||||||||||| | | || ||||||| ||||| |||||||| |||||||||| ||| ||||||||||| ||||| |
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| T |
34606351 |
agacttatgacggtgttgttggcgacatgaccatactggcagagagattgcaatatgtagattttactgtgccatatgcagagtcaggattgtcgatgat |
34606450 |
T |
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| Q |
253 |
agttccgatgaagcctggagagtcagcatggatgttt |
289 |
Q |
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| T |
34606451 |
agttacggagaagtctgaagaatcagcatggatgttt |
34606487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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