View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21636_high_29 (Length: 266)
Name: NF21636_high_29
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_high_29 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 41757455 - 41757192
Alignment:
| Q |
1 |
tgatcgcttagatggtgatggcccgccaacaataccatgtattgtaccggtttgaagattggtttctggaatagatacatcctttgcaggcttgaatccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41757455 |
tgatcgcttagatggtgatggcccgccaacaataccatgtattgtaccggtttgaagattggtttctggaatagatacatcctttgcaggcttgaatccc |
41757356 |
T |
|
| Q |
101 |
tctgatgtgttcgcattgcaaagcgctcggattgaatttttgtacaagtttggaactgactttgatgtctctggcccctggaaattaaagagaagcagcn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41757355 |
tctgatgtgttcgcattgcaaagcgctcggattgaatttttgtacaagtttggaactgactttgatgtctctggcccctggaaattaaagagaagcagca |
41757256 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnnnttgtgtaaaccacaatgcaggtcgcaacatcacggtttttaacgtctcagt |
266 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41757255 |
aaaagtttgaaaaaat--tgtaaaccacaatgcaggtcgcaacatcacggtttttaacgtctcagt |
41757192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 41765538 - 41765381
Alignment:
| Q |
1 |
tgatcgcttagatggtgatggcccgccaacaataccatgtattgtaccggtttgaagattggtttctggaatagatacatcctttgcaggcttgaatccc |
100 |
Q |
| |
|
||||| ||||||||||||||| ||||||| || | ||| ||| | |||||| ||| |||| ||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
41765538 |
tgatctcttagatggtgatggtccgccaagaagatcatcaattatgccggttcgaacattgatttctggaatagatacatcttttactggcttgaatccc |
41765439 |
T |
|
| Q |
101 |
tctgatgtgttcgcattgcaaagcgctcggattgaatttttgtacaagtttggaactg |
158 |
Q |
| |
|
||||| ||||| |||||||||| ||| || || ||||| ||||||||||||||||||| |
|
|
| T |
41765438 |
tctgaggtgttggcattgcaaaacgcacgaatcgaattcttgtacaagtttggaactg |
41765381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University