View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_high_37 (Length: 227)
Name: NF21636_high_37
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_high_37 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 29142117 - 29141901
Alignment:
| Q |
11 |
ctatactcaccgacaatagaaagagccaaaacattgcatttataattgttttcactaaagagactgaactcagctaatataataatacttagcaacaaca |
110 |
Q |
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| T |
29142117 |
ctatacccaccgacaatagaaagagccaaaacattgcatttataattgttttcactaaagagactgaactcagctaatataataatacttagcaacaaca |
29142018 |
T |
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| Q |
111 |
gaaagagccgaaaccctgcaaagataacatttctctttaaagttacaccaaacgaactcattttgtgtcggtaagtaaaagctatgaatcaaatgtgact |
210 |
Q |
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| T |
29142017 |
gaaagagccgaaaccctgcaaagataacatttctctttaaagttacaccaaatgaactcattttgtgtcggtaagtaaaagctatgaatcaaatgtgact |
29141918 |
T |
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| Q |
211 |
ttctccaaacgtacaaa |
227 |
Q |
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| T |
29141917 |
ttctctaaacgtacaaa |
29141901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 34254747 - 34254690
Alignment:
| Q |
170 |
attttgtgtcggtaagtaaaagctatgaatcaaatgtgactttctccaaacgtacaaa |
227 |
Q |
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| T |
34254747 |
attttgtgtcggtaagtaaaagctacgtatcaaatgtgactttctccaaacatacaaa |
34254690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 29014476 - 29014420
Alignment:
| Q |
139 |
atttctctttaaagttacaccaaacgaactcattttgtgtcggtaagtaaaagctat |
195 |
Q |
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| T |
29014476 |
atttcactttaaagttacactgaactaactcatctagtgtcggtaagtaaaagctat |
29014420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 37896941 - 37896888
Alignment:
| Q |
125 |
cctgcaaagataacatttctctttaaagttacaccaaacgaactcattttgtgt |
178 |
Q |
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| T |
37896941 |
cctgcgaagttaacatttcagtttaaagttacaccaaactaactcattttgtgt |
37896888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 29115362 - 29115327
Alignment:
| Q |
123 |
accctgcaaagataacatttctctttaaagttacac |
158 |
Q |
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| T |
29115362 |
accctgcaaagataacatttctgtttaaagttacac |
29115327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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