View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_high_39 (Length: 205)
Name: NF21636_high_39
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_high_39 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 9641259 - 9641381
Alignment:
| Q |
66 |
tagattaagactataccaaattaggggtaatgccacgagcgacagcagctccaccaacaccatattccaatattaaggaccaaccaatcaaccaagaaac |
165 |
Q |
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| T |
9641259 |
tagattaagactataccaaattaggggtaatgccacgagcgacagcagctccaccaacaccatattccaatattaaggaccaaccaatcaaccaagaaac |
9641358 |
T |
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| Q |
166 |
cctgcaaacattatacacaaaat |
188 |
Q |
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| T |
9641359 |
cctgcaaacattatacacaaaat |
9641381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 79 - 172
Target Start/End: Original strand, 9657836 - 9657929
Alignment:
| Q |
79 |
taccaaattaggggtaatgccacgagcgacagcagctccaccaacaccatattccaatattaaggaccaaccaatcaaccaagaaaccctgcaa |
172 |
Q |
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| T |
9657836 |
taccaaattgggggttatgccacgagcaacagcagctccaccaataccatattccaatattaaggaccaacctatcaaccaagcaaccctgcaa |
9657929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 9640933 - 9641001
Alignment:
| Q |
1 |
tattaatctcatttcaacactcacagcagaaattctttacttgctattcaaacaaactaatatgctaga |
69 |
Q |
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| T |
9640933 |
tattaatctcatttcaacactcacagcagaaattctttacatgctattcaaacaaactaatatgctaga |
9641001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 176
Target Start/End: Original strand, 9632595 - 9632695
Alignment:
| Q |
76 |
ctataccaaattaggggtaatgccacgagcgacagcagctccaccaacaccatattccaatattaaggaccaaccaatcaaccaagaaaccctgcaaaca |
175 |
Q |
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| T |
9632595 |
ctataccaaatttggggttatgccacgagcaacaacagctccgccaaccacagtttccagagttaaggaccagccaatcaaccaagcaaccctgcaaaca |
9632694 |
T |
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| Q |
176 |
t |
176 |
Q |
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| T |
9632695 |
t |
9632695 |
T |
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