View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_high_5 (Length: 605)
Name: NF21636_high_5
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_high_5 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0223 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 8 - 605
Target Start/End: Original strand, 10764540 - 10765137
Alignment:
| Q |
8 |
ggacatcatcctgtatgtattactaactacttaatccttttttatttgtatcttattttcacttgattaattatttagggtttaggctttggagattata |
107 |
Q |
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| T |
10764540 |
ggacatcatcctgtatgtattactaactacttaatccttttttatttgtatcttattttcacttgattaattatttagggtttaggctttggagattata |
10764639 |
T |
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| Q |
108 |
ttattagcccnnnnnnnattatatctatatatatgcccttttttgtcgaaaaatagttgttaattgataactaatatttttagaaggggtaaaaagccat |
207 |
Q |
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| T |
10764640 |
ttattagccctttttttattatatctatatatatgcccttttttgtcgaaaaatagttgttaattgataactaatatttttagaaggggtaaaaagccat |
10764739 |
T |
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| Q |
208 |
tttgatctttagatatgtgaagcttgtcacaataatcataaaatgtttcaaaattacaaagtatacctaaacgtgtcttttgctagtcgtttttgtcctc |
307 |
Q |
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| T |
10764740 |
tttgatctttagatatgtgaagcttgtcacaataatcataaaatgtttcaaaattacaaagtatacctaaacgtgtcttttgctagtcgtttttgtcctc |
10764839 |
T |
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| Q |
308 |
aaatgtttctttagttagtttgtttagtctgtaaatgtttttcgttagtcaattcggtctgtaaatttactaacagaacataactttgattggtttttat |
407 |
Q |
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| T |
10764840 |
gaatgtttctttggttagtttgtttagtctgtaaatgtttttcgttagtcaattcggtctgtaaatttactaacagaacataactttgattggtttttat |
10764939 |
T |
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| Q |
408 |
tcactaacaggttgtggcaatgagtttgaggaatgaattacacggtccacgccaaaatctaaaagattggtacaagtacatgagccaaggagcacttgca |
507 |
Q |
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| T |
10764940 |
tcactaacaggttgtggcaatgagtttgaggaatgaattacacggtccacgccaaaatctaaaagattggtacaagtacatgagccaaggagcatttgca |
10765039 |
T |
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| Q |
508 |
atccataaatcaaatccaaatgtgcttgttcttatctcaggtttaaactatgacactgagttgcagtttttaaggaacaaatcaatggacatagactt |
605 |
Q |
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| T |
10765040 |
atccataaatcaaatccaaatgtgcttgttcttatctcaggtttaaactatgacactgagttgcagtttttaaggaacaaaccaatggacatagactt |
10765137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 392 - 587
Target Start/End: Original strand, 38325194 - 38325389
Alignment:
| Q |
392 |
tttgattggtttttattcactaacaggttgtggcaatgagtttgaggaatgaattacacggtccacgccaaaatctaaaagattggtacaagtacatgag |
491 |
Q |
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| T |
38325194 |
tttgattgttttttatcgactaacagattgtggcaatgagcttgaggaatgaattgcgtggtccacgccaaaacctaagagattggtacaagtacatgag |
38325293 |
T |
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| Q |
492 |
ccaaggagcacttgcaatccataaatcaaatccaaatgtgcttgttcttatctcaggtttaaactatgacactgagttgcagtttttaaggaacaa |
587 |
Q |
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| T |
38325294 |
ccatgcagcattagtcatccataaaacaaatccaaatgtgcttgtggttatctcaggtttgaactatgacactgagttgcagtttttaaggaacaa |
38325389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 10120 - 10184
Alignment:
| Q |
270 |
atacctaaacgtgtcttttgctagtcgtttttgtcctcaaatgtttctttagttagtttgtttag |
334 |
Q |
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| T |
10120 |
atacctaaatgtgtcctttgttagtcattttggtcctcaaatgtgtctttagttagttagtttag |
10184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 31958852 - 31958927
Alignment:
| Q |
255 |
tcaaaattacaaagtatacctaaacgtgtcttttgctagtcgtttttgtcctcaaatgtttctttagttagtttgtt |
331 |
Q |
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| T |
31958852 |
tcaaaattacaaaacatacttaaatgtgtcttttgttagtc-attttgtccttgaatgtgtctttagttagtttgtt |
31958927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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