View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_high_6 (Length: 590)
Name: NF21636_high_6
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 58 - 579
Target Start/End: Original strand, 10340529 - 10341057
Alignment:
| Q |
58 |
aaaactatggtgctttaaaa-aagcctaaaagcattaattagcataccattcaattaaaagcgagccaatcaagtaacattcattatgcaatgattatat |
156 |
Q |
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| T |
10340529 |
aaaactatggtgctttaaaaaaagcctaaaagcattaattagcataccattcaattaaaagcgagccaatcaagtaacattcattatgcaatgattatat |
10340628 |
T |
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| Q |
157 |
caagataacggcgtgaattgaaatcaaatcaaataattaagaagattaagattagttaatgcaagtaatgtagagttagactaaaataattgatatttga |
256 |
Q |
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| T |
10340629 |
caagataacggcgtgaattgaaatcaaatcaaataattaagaagattaagattagttaatgcaagtaatgtagagttagactaaaataattgatatttga |
10340728 |
T |
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| Q |
257 |
aagtgagtggatgacatcatatttcatctnnnnnnnnnnnngaaatgacacctaaaagatccgtgtcatactctacttcagcatagtgcattatccactc |
356 |
Q |
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| T |
10340729 |
aagtgagtggatgacatcatatttcatct--aaaaaaataagaaatgacacctaaaagatccgtgtcatactctacttcagcatagtgcattatccactc |
10340826 |
T |
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| Q |
357 |
taattataatcactttgatgttggacttaagaaaggactacaaggcatgcttatgc--------nnnnnnnnnnncacagtaactttttcaacaggtaga |
448 |
Q |
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| T |
10340827 |
taattataatcactttgatgttggacttaagaaaggactactatgcatgcttatgcaaaaaaaaaaaaaaaaaaacacagtaactttttcaacaggtaga |
10340926 |
T |
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| Q |
449 |
gttcaagggatgaaatctagaaatggacctgtcaatcaattattagctatgtttagaaaagtaaatactatgtcatttatggtttaactatatgtgagaa |
548 |
Q |
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| T |
10340927 |
gttcaagggatgagatctagaaatggacctgtcaatcaattattagctatgtttagaaaagtaaatactatgtcatttatggtttaactatgtgtgagaa |
10341026 |
T |
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| Q |
549 |
atgaagaagtgaagaagcaaagtatgatgat |
579 |
Q |
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| T |
10341027 |
atgaagaagtgaagaagcaaagtatgatgat |
10341057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 10340442 - 10340504
Alignment:
| Q |
1 |
caccacagttatgagaataatgttccaaaatgcactagtggcccataacaaggtgtgaaaact |
63 |
Q |
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| T |
10340442 |
caccacagttatgagaataatgttccaaaatgcactagtggcccataacaaggtgtgaaaact |
10340504 |
T |
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