View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21636_low_10 (Length: 508)

Name: NF21636_low_10
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21636_low_10
NF21636_low_10
[»] chr4 (13 HSPs)
chr4 (48-370)||(54005499-54005832)
chr4 (363-492)||(54006069-54006198)
chr4 (186-370)||(39477859-39478045)
chr4 (277-370)||(47560920-47561013)
chr4 (50-115)||(47561159-47561224)
chr4 (1-39)||(4758776-4758814)
chr4 (1-39)||(53621327-53621365)
chr4 (1-39)||(2385194-2385232)
chr4 (1-39)||(6246719-6246757)
chr4 (1-39)||(20688527-20688565)
chr4 (5-39)||(36099602-36099636)
chr4 (1-39)||(38687910-38687948)
chr4 (1-39)||(49122520-49122558)
[»] chr7 (7 HSPs)
chr7 (222-363)||(21933705-21933845)
chr7 (273-370)||(8562286-8562383)
chr7 (48-97)||(8562559-8562607)
chr7 (1-39)||(20397926-20397964)
chr7 (1-39)||(34281668-34281706)
chr7 (141-178)||(8562484-8562521)
chr7 (48-100)||(21933981-21934033)
[»] chr2 (7 HSPs)
chr2 (278-370)||(24773313-24773405)
chr2 (48-115)||(24773051-24773118)
chr2 (1-39)||(6761576-6761614)
chr2 (1-39)||(16241266-16241304)
chr2 (1-39)||(7765793-7765831)
chr2 (1-39)||(18452679-18452717)
chr2 (1-39)||(32750341-32750379)
[»] scaffold0690 (1 HSPs)
scaffold0690 (48-302)||(2705-2975)
[»] chr5 (10 HSPs)
chr5 (48-115)||(17306345-17306411)
chr5 (48-115)||(17273477-17273543)
chr5 (1-39)||(25027805-25027843)
chr5 (1-39)||(29374281-29374319)
chr5 (1-39)||(37699779-37699817)
chr5 (1-39)||(903965-904003)
chr5 (1-39)||(1643455-1643493)
chr5 (5-39)||(13144995-13145029)
chr5 (1-39)||(26898302-26898340)
chr5 (1-39)||(31802957-31802995)
[»] chr6 (5 HSPs)
chr6 (185-263)||(15909162-15909241)
chr6 (1-39)||(885601-885639)
chr6 (1-39)||(14931364-14931402)
chr6 (48-178)||(15909262-15909400)
chr6 (1-39)||(31971029-31971067)
[»] chr8 (6 HSPs)
chr8 (1-39)||(2229069-2229107)
chr8 (1-39)||(2339401-2339439)
chr8 (1-39)||(25848078-25848116)
chr8 (1-39)||(27793308-27793346)
chr8 (1-39)||(30923920-30923958)
chr8 (1-39)||(43135155-43135193)
[»] chr3 (8 HSPs)
chr3 (1-39)||(6086900-6086938)
chr3 (1-36)||(9440130-9440165)
chr3 (1-39)||(10049779-10049817)
chr3 (1-39)||(23825260-23825298)
chr3 (1-39)||(26999132-26999170)
chr3 (1-39)||(40214899-40214937)
chr3 (1-39)||(51698113-51698151)
chr3 (1-37)||(19202251-19202287)
[»] chr1 (6 HSPs)
chr1 (1-39)||(2352420-2352458)
chr1 (1-39)||(38830594-38830632)
chr1 (1-39)||(2961103-2961141)
chr1 (1-39)||(9301918-9301956)
chr1 (2-39)||(28989384-28989421)
chr1 (48-96)||(15739051-15739099)
[»] scaffold0144 (1 HSPs)
scaffold0144 (4-39)||(38939-38974)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-39)||(11141-11179)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 48 - 370
Target Start/End: Complemental strand, 54005832 - 54005499
Alignment:
Q  48 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaatggtccaccctttccactcacggcccttcctttcctcacacttttctaac 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||    
T  54005832 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaatggtccaccctttccactcacggcccttccttccctcagatttttctaac 54005733  T
Q  148 gcacgcaatttcaaacttcaacttccctctt----------atatattgtcgctgcccagtccgctttcaatctaccaataattgttgtcatagtcgagg 237  Q
    |||| ||||||||||||||||||||||||||          |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54005732 gcacacaatttcaaacttcaacttccctcttcagctcttttatatattgtcgctgcccattccgctttcaatctaccaataattgttgtcatagtcgagg 54005633  T
Q  238 tgaaagccctcttcttagtctctctc-cacaccctatcttagttttttcacttcgaatttgaaagttaaatttttgtctctagttgatttttgaatttat 336  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  54005632 tgaaagccctcttcttagtctctctctcacaccctatctcagttttttcacttcgaatttaaaagttaaatttttgtctctagttgatttttgaattgat 54005533  T
Q  337 aagtggtttgttattgtatgtctatgtctttgtt 370  Q
    || ||||||||| |||||||||||||||||||||    
T  54005532 aaatggtttgttgttgtatgtctatgtctttgtt 54005499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 363 - 492
Target Start/End: Original strand, 54006069 - 54006198
Alignment:
Q  363 tctttgttttggtagtatcttaagcttgggattgctctaacattagtatcaccttaaatttggagtaggaacattaaagaatttggttacactaaataaa 462  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54006069 tctttgttttggtagtgtcttaagcttgggattgctctaacattagtatcaccttaaatttggagtaggaacattaaagaatttggttacactaaataaa 54006168  T
Q  463 agagacacacaaattggtctctcttctata 492  Q
    || |||||||||||||||||||||||||||    
T  54006169 agggacacacaaattggtctctcttctata 54006198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 370
Target Start/End: Complemental strand, 39478045 - 39477859
Alignment:
Q  186 gtcgctgcccagtccgctttcaatctacc-aataattgttgtcatagtcgaggtgaaa-gccctcttcttagtctctctc-cacaccctatcttagtttt 282  Q
    ||||||||||  ||||||||||||||||| ||| |   ||| |||||  ||||||||| ||||||||| ||||||||||| ||| |||| ||| ||||||    
T  39478045 gtcgctgcccgttccgctttcaatctacccaatcaacattgccatagctgaggtgaaaagccctcttcgtagtctctctctcactccctgtctcagtttt 39477946  T
Q  283 ttcacttcgaatttgaaagttaaatttttgtctctagttgatttttgaatttataagtggtttgttattgtatgtctatgtctttgtt 370  Q
    | ||||| |||||||||||| || || || ||||| ||||||||||||||| ||||||| | |||| |||||||| ||||||||||||    
T  39477945 t-cactttgaatttgaaagtcaatttcttatctcttgttgatttttgaattgataagtgttctgttgttgtatgtatatgtctttgtt 39477859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 47561013 - 47560920
Alignment:
Q  277 agttttttcacttcgaatttgaaagttaaatttttgtctctagttgatttttgaatttataagtggtttgttattgtatgtctatgtctttgtt 370  Q
    ||||||| ||||| ||||||||||| ||| || ||||| || ||||||||||||||| ||| ||| |||||| |||||||||||| ||||||||    
T  47561013 agtttttccactttgaatttgaaaggtaatttcttgtcacttgttgatttttgaattgataggtgttttgttgttgtatgtctatatctttgtt 47560920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 47561224 - 47561159
Alignment:
Q  50 ataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaatggtccaccctttccact 115  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||  |||||| ||||||    
T  47561224 ataaggaaaatactaaaacactctttgttattaaagaaaaatacaaaacggctcaccctctccact 47561159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4758814 - 4758776
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  4758814 aaagtcaactgtctcttgtaaataggaccggagggagta 4758776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 53621365 - 53621327
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  53621365 aaagtcaactgtctcttgtaaataggaccggagggagta 53621327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2385232 - 2385194
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  2385232 aaagtcaactttctcttgtaaataggaccggagggagta 2385194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6246719 - 6246757
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  6246719 aaagtcaactttctcttgtaaataggaccggagggagta 6246757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20688527 - 20688565
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  20688527 aaagtcaactgtctcttgtaaataggaccggaggtagta 20688565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 36099602 - 36099636
Alignment:
Q  5 tcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  36099602 tcaactgtctcttgtaaataggaccggagggagta 36099636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 38687948 - 38687910
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  38687948 aaagtcaactttctcttgtaaataagaccggagggagta 38687910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 49122558 - 49122520
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  49122558 aaagtcaactgtctcttgtaaatagaaccggagggagta 49122520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 222 - 363
Target Start/End: Complemental strand, 21933845 - 21933705
Alignment:
Q  222 gttgtcatagtcgaggtgaaagccctcttcttagtctctctccacaccctatcttagttttttcacttcgaatttgaaagttaaatttttgtctctagtt 321  Q
    |||||||||| ||||||||||||||||||| || |||||||| || || | ||| |||||||||||||||||||||||| | || || |||||||| ||     
T  21933845 gttgtcatagccgaggtgaaagccctcttcgtaatctctctc-actccttgtctcagttttttcacttcgaatttgaaaatcaatttcttgtctcttgtc 21933747  T
Q  322 gatttttgaatttataagtggtttgttattgtatgtctatgt 363  Q
    |||||||||||  |||  || |||||| |||||||| |||||    
T  21933746 gatttttgaatcgatagatgttttgttgttgtatgtttatgt 21933705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 8562383 - 8562286
Alignment:
Q  273 tcttagttttttcacttcgaatttgaaagttaaatttttgtctctagttgatttttgaatttataagtggtttgttattgtatgtctatgtctttgtt 370  Q
    |||||| |||||||||||||||||||||||||| || |||| | | ||||||||||||||| ||| ||| |||||| |||||| || |||||||||||    
T  8562383 tcttaggtttttcacttcgaatttgaaagttaatttcttgtttgttgttgatttttgaattgataggtgttttgttgttgtatatccatgtctttgtt 8562286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 8562607 - 8562559
Alignment:
Q  48 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaa 97  Q
    |||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  8562607 ctattaggaaattacaaaaacaccctt-gctattaaagaaaaatacaaaa 8562559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 20397926 - 20397964
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  20397926 aaagtcaactttctcttgtaaataggaccggagggagta 20397964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34281706 - 34281668
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  34281706 aaagtcaactttctcttgtaaataggaccggagggagta 34281668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 8562521 - 8562484
Alignment:
Q  141 ttctaacgcacgcaatttcaaacttcaacttccctctt 178  Q
    |||||||||||  |||||||||||||||||||||||||    
T  8562521 ttctaacgcacaaaatttcaaacttcaacttccctctt 8562484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 21934033 - 21933981
Alignment:
Q  48 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaatgg 100  Q
    ||||||||||||||||||||||||| ||| |||| ||||| |||| | |||||    
T  21934033 ctataaggaaattactaaaacaccccttgttattcaagaagaatatataatgg 21933981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 278 - 370
Target Start/End: Original strand, 24773313 - 24773405
Alignment:
Q  278 gttttttcacttcgaatttgaaagttaaatttttgtctctagttgatttttgaatttataagtggtttgttattgtatgtctatgtctttgtt 370  Q
    ||||||||||||||||||||||||| || || |||||||| ||||||||||||| | ||| ||| ||| || |||||||||||||||||||||    
T  24773313 gttttttcacttcgaatttgaaagtcaatttcttgtctcttgttgatttttgaactgatacgtgatttattgttgtatgtctatgtctttgtt 24773405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 24773051 - 24773118
Alignment:
Q  48 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaatggtccaccctttccact 115  Q
    |||||||||||| |||||||||||| ||| |||||||| ||||||||||||||| |||||| ||||||    
T  24773051 ctataaggaaatcactaaaacaccccttgttattaaaggaaaatacaaaatggttcaccctctccact 24773118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6761576 - 6761614
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6761576 aaagtcaactgtctcttgtaaataggaccggagggagta 6761614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 16241304 - 16241266
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  16241304 aaagtcaactgtctcttgtaaataggaccggagggagta 16241266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 7765831 - 7765793
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  7765831 aaagtcaactttctcttgtaaataggaccggagggagta 7765793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18452679 - 18452717
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  18452679 aaagtcaactgtctcttgtaaataggaccgaagggagta 18452717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 32750379 - 32750341
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  32750379 aaagtcaactttctcttgtaaataggaccggagggagta 32750341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 302
Target Start/End: Original strand, 2705 - 2975
Alignment:
Q  48 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaa-tggtccaccctttccact-------cacggcccttcctttcctcacact 139  Q
    ||||||| |||||| |||||||  | ||  |||||||||||||||||||| ||||||||| | || |||       |||| |||||||||| | ||  ||    
T  2705 ctataagaaaattagtaaaacattcctttttattaaagaaaaatacaaaaatggtccaccttctctactactcaaccacgacccttccttttcccaggct 2804  T
Q  140 tttctaacgcacgcaatttcaaacttcaacttccctcttata------tattgtcgctgcccagtccgctttcaatctacc-aataattgttgtcatagt 232  Q
     ||||||||||| ||||||| ||||||||||| ||||||  |      || ||| |||||||| ||| |||||||  |||| ||| | |||||||||||     
T  2805 cttctaacgcacacaatttccaacttcaactttcctcttcaactcttttaatgtggctgcccattccactttcaagttacccaatcagtgttgtcatagc 2904  T
Q  233 cgaggtgaaagccctcttcttagtctctctc-cacaccctatcttagttttttcacttcgaatttgaaagt 302  Q
    ||| ||||||||||||||| |||||||||||  || || | |||||||||||||||| |||||||||||||    
T  2905 cgatgtgaaagccctcttcgtagtctctctcttactccttgtcttagttttttcactgcgaatttgaaagt 2975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 17306411 - 17306345
Alignment:
Q  48 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaatggtccaccctttccact 115  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||| |||||||| ||||||| ||||||    
T  17306411 ctataaggaaaatactaaaacaccctttg-tataaaagaaaaatccaaaatggcccaccctctccact 17306345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 17273543 - 17273477
Alignment:
Q  48 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaatggtccaccctttccact 115  Q
    ||||||||||| ||||||||||||| ||| ||| |||||||||| |||||||| ||||||| ||||||    
T  17273543 ctataaggaaaatactaaaacaccccttg-tataaaagaaaaatccaaaatggcccaccctctccact 17273477  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25027805 - 25027843
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  25027805 aaagtcaactgtctcttgtaaataggaccggagggagta 25027843  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29374281 - 29374319
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29374281 aaagtcaactgtctcttgtaaataggaccggagggagta 29374319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 37699817 - 37699779
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  37699817 aaagtcaactgtctcttgtaaataggaccggagggagta 37699779  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 904003 - 903965
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  904003 aaagtcaactttctcttgtaaataggaccggagggagta 903965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1643455 - 1643493
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  1643455 aaagtcaactgtctcttataaataggaccggagggagta 1643493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 13144995 - 13145029
Alignment:
Q  5 tcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||| ||||||||||||||    
T  13144995 tcaactgtctcttgtaaataggaccggagggagta 13145029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26898302 - 26898340
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  26898302 aaagtcaactttctcttgtaaataggaccggagggagta 26898340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31802995 - 31802957
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  31802995 aaagtcaactttctcttgtaaataggaccggagggagta 31802957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 15909241 - 15909162
Alignment:
Q  185 tgtcgctgcccagtccgctttcaatctacc-aataattgttgtcatagtcgaggtgaaagccctcttcttagtctctctc 263  Q
    |||||||||||| ||| |||||||  |||| ||| | ||||||||||| ||| ||||||||||||||| |||||||||||    
T  15909241 tgtcgctgcccattccactttcaagttacccaatcagtgttgtcatagccgatgtgaaagccctcttcgtagtctctctc 15909162  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 885639 - 885601
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  885639 aaagtcaactgtctcttgtaaataggaccggagggagta 885601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14931364 - 14931402
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  14931364 aaagtcaattgtctcttgtaaatatgaccggagggagta 14931402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 15909400 - 15909262
Alignment:
Q  48 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaaa-tggtccaccctttccact-------cacggcccttcctttcctcacact 139  Q
    ||||||| |||||| |||||||  | ||  |||||||||||||||||||| ||||||||| | || |||       |||| |||||||||| | ||  ||    
T  15909400 ctataagaaaattagtaaaacattcctttttattaaagaaaaatacaaaaatggtccaccttctctactactcaaccacgacccttccttttcccaagct 15909301  T
Q  140 tttctaacgcacgcaatttcaaacttcaacttccctctt 178  Q
     ||||||||||||||||||| ||||||||||| ||||||    
T  15909300 cttctaacgcacgcaatttccaacttcaactttcctctt 15909262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31971067 - 31971029
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  31971067 aaagtcaactttctcttgtaaataagaccggagggagta 31971029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2229107 - 2229069
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  2229107 aaagtcaactgtctcttgtaaataggaccggagggagta 2229069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2339401 - 2339439
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  2339401 aaagtcaactttctcttgtaaataggaccggagggagta 2339439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25848078 - 25848116
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  25848078 aaagtcaactgtctcttgtaaataggaccggaggtagta 25848116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27793308 - 27793346
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  27793308 aaagtcaactttctcttgtaaataggaccggagggagta 27793346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30923958 - 30923920
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  30923958 aaagtcaactgtctcttgtaaataggaccggaggaagta 30923920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43135155 - 43135193
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  43135155 aaagtcaactgtctcttgtaaataggaccggaggaagta 43135193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 6086938 - 6086900
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  6086938 aaagtcaactgtctcttgtaaataggaccggagggagta 6086900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9440165 - 9440130
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggaggga 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  9440165 aaagtcaactgtctcttgtaaataggaccggaggga 9440130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10049779 - 10049817
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  10049779 aaagtcaattgtctcttgtaaataggaccggagggagta 10049817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 23825260 - 23825298
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| |||||||||||||||| |||||||||||    
T  23825260 aaagtcaactttctcttgtaaatatgatcggagggagta 23825298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26999132 - 26999170
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  26999132 aaagtcaaatgtctcttgtaaataggaccggagggagta 26999170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 40214937 - 40214899
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  40214937 aaagtcaactttctcttgtaaataggaccggagggagta 40214899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 51698151 - 51698113
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  51698151 aaagtcaactttctcttgtaaataggaccggagggagta 51698113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19202287 - 19202251
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggag 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  19202287 aaagtcaactttctcttgtaaataggaccggagggag 19202251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2352420 - 2352458
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  2352420 aaagtcaactgtctcttgtaaataggaccggagggagta 2352458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 38830594 - 38830632
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  38830594 aaagtcaactgtctcttgtaaataggaccggagggagta 38830632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2961141 - 2961103
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  2961141 aaagtcaactttctcttgtaaataggaccggagggagta 2961103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 9301956 - 9301918
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  9301956 aaagttaactgtctcttgtaaataggaccggagggagta 9301918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 28989384 - 28989421
Alignment:
Q  2 aagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  28989384 aagtcaactttctcttgtaaataagaccggagggagta 28989421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 15739099 - 15739051
Alignment:
Q  48 ctataaggaaattactaaaacaccctttgctattaaagaaaaatacaaa 96  Q
    |||||||||||| |||||||||||  ||  |||||||||||||||||||    
T  15739099 ctataaggaaatgactaaaacaccacttattattaaagaaaaatacaaa 15739051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 38939 - 38974
Alignment:
Q  4 gtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    ||||||||||||||||||||| ||||||||||||||    
T  38939 gtcaactgtctcttgtaaataggaccggagggagta 38974  T

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Target: scaffold0221 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11141 - 11179
Alignment:
Q  1 aaagtcaactgtctcttgtaaatatgaccggagggagta 39  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  11141 aaagtcaactttctcttgtaaataggaccggagggagta 11179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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