View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21636_low_12 (Length: 481)
Name: NF21636_low_12
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_12 |
 | |
|
| [»] scaffold0204 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0204 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 18062 - 18307
Alignment:
| Q |
1 |
tgcagctttctgtaatataaaagaaatggaagatgggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaaggaagggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18062 |
tgcagctttctgtaatataaaagaaatggaagatgggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaaggaagggtc |
18161 |
T |
|
| Q |
101 |
actgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18162 |
actgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactct |
18261 |
T |
|
| Q |
201 |
caaaacttcttcatattgattttatattaaccttcactttcaggttattattctggaataaa |
262 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18262 |
ca----------------attttatattcaccttcactttcaggttattattctggaataaa |
18307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 288 - 476
Target Start/End: Original strand, 18321 - 18508
Alignment:
| Q |
288 |
gttaaaaaacttcaacttacttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgattgttctttcatgtct |
387 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18321 |
gttaaaaaacttcaact-acttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgagtgttctttcatgtct |
18419 |
T |
|
| Q |
388 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacatcccagctttcttctcact |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
18420 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacttcccagctttcttcgcact |
18508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 5347 - 5431
Alignment:
| Q |
98 |
gtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctg |
182 |
Q |
| |
|
||||| |||||||| ||| ||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
5347 |
gtcacagttcatgtcatccttgcttgcattgttgctgccactggagggtctctatttggctatgatgttggtatttcaggttctg |
5431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 48330540 - 48330785
Alignment:
| Q |
1 |
tgcagctttctgtaatataaaagaaatggaagatgggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaaggaagggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48330540 |
tgcagctttctgtaatataaaagaaatggaagatgggtcttcccctacgggtggtggtactgtagataagggaagagctgagcaatataaaggaagggtc |
48330639 |
T |
|
| Q |
101 |
actgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48330640 |
actgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactct |
48330739 |
T |
|
| Q |
201 |
caaaacttcttcatattgattttatattaaccttcactttcaggttattattctggaataaa |
262 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48330740 |
ca----------------attttatattcaccttcactttcaggttattattctggaataaa |
48330785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 288 - 476
Target Start/End: Original strand, 48330799 - 48330986
Alignment:
| Q |
288 |
gttaaaaaacttcaacttacttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgattgttctttcatgtct |
387 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48330799 |
gttaaaaaacttcaact-acttgtgttgtttgtgtttgaaagctgaaaagggaaatacacatgggttgaatctcattttcttgagtgttctttcatgtct |
48330897 |
T |
|
| Q |
388 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacatcccagctttcttctcact |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
48330898 |
gtcatattttcaataatctgcacttctctcaactgcttaaagaccttttcctttattctaagatgcaacttcccagctttcttcgcact |
48330986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 48342455 - 48342616
Alignment:
| Q |
50 |
ggtggtggtactgtagataag---ggaagagctgagcaatataaaggaagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggt |
146 |
Q |
| |
|
|||||||||||||| |||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48342455 |
ggtggtggtactgtggataagaacggaagggcagagcaatataagggaagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggt |
48342554 |
T |
|
| Q |
147 |
ccctttttggctatgatgttggtatttcaggttctgtcttaatcccttcactctcaaaacttc |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48342555 |
ccctttttggctatgacgttggtatttcaggtt-tgtcttaatcccttcactctcaaaacttc |
48342616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 48342721 - 48342757
Alignment:
| Q |
322 |
tttgaaagctgaaaagggaaatacacatgggttgaat |
358 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
48342721 |
tttgaaagctgaaaagggaaatacatatgagttgaat |
48342757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 41416562 - 41416468
Alignment:
| Q |
86 |
tataaaggaagggtcactgttcatgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttc |
180 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| ||||||||||||||||| || || || |||||||||||||||||||| ||||||||||| |
|
|
| T |
41416562 |
tataaagggagggtcactccctatgttatcattgcatgcattgttgctgctacaggaggatcactttttggctatgatgttggaatttcaggttc |
41416468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 36296889 - 36296816
Alignment:
| Q |
108 |
atgttatcattgcttgcattgttgctgctactggtgggtccctttttggctatgatgttggtatttcaggttct |
181 |
Q |
| |
|
||||||||||||||||||||||||| ||||| || || || |||||||||||||||||||| |||||||||||| |
|
|
| T |
36296889 |
atgttatcattgcttgcattgttgcagctacagggggatcactttttggctatgatgttggaatttcaggttct |
36296816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University