View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_14 (Length: 464)
Name: NF21636_low_14
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 42845972 - 42846387
Alignment:
| Q |
1 |
acacagggctactgatcttgtgtggctgagagatgtttcacctgactaagcaaaataattcatgctcagcataaggggatcgggaatgaaaagtgtggag |
100 |
Q |
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| T |
42845972 |
acacagggctactgatcttgtgtggctgagagatgtttcacctgactaagcaaaataattcatgctcaacataaggggatcgggaatgaaaagtgtggag |
42846071 |
T |
|
| Q |
101 |
tgcatgcgaccattctcgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcttctccttaaaatcatccgcatccatgttttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
42846072 |
tgcatgcgaccattctcgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcatctccttaaaatcatctgcatccatgttttctt |
42846171 |
T |
|
| Q |
201 |
tgctaggctctgcgagggaccactcccaattcgttacattctggatcatttccctttagatattggtcaaactcatgtctcatcacaagtaaaccaaact |
300 |
Q |
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| T |
42846172 |
tgctaggctctgcgagggaccactcccaattcgttacattctg---------------gatattggtcaaactcatgtctcatcacaagtaaaccaaact |
42846256 |
T |
|
| Q |
301 |
ctgcattttcaaaattacaatcaatatcttcaaaattattcaaaaagctatcactgcgaattcaaaaaataacgtgggcgtgaatagtcacaaaataacc |
400 |
Q |
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| T |
42846257 |
ctgcattttcaaaattacaatcaatatcttcaaaattattcaaaaagctatcactgcgaattcaaaaaataacgtgggcgtgaatagtcacaaaataacc |
42846356 |
T |
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| Q |
401 |
tatcaatatcttcaaaattacataggcattta |
432 |
Q |
| |
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| T |
42846357 |
-atcaatatcttcaaaattacataggcattta |
42846387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 117 - 369
Target Start/End: Original strand, 42825334 - 42825581
Alignment:
| Q |
117 |
cgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcttctccttaaaatcatccgcatccatgttttctttgctaggctctgcgag |
216 |
Q |
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| T |
42825334 |
cgtcatcctcgttgtctctaaatactttccgctttccctttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgag |
42825433 |
T |
|
| Q |
217 |
ggaccactcccaattcgttacattctggatcatttccctttagatattggtcaaactcatgtctcatcacaagtaaaccaaactctgcattttcaaaatt |
316 |
Q |
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| T |
42825434 |
gaaccactcccaattctccacattccggatcatg-ccctttggatactggtcaaactcatgcctcataacaagaaaaccaaactctgcattttcaaaatt |
42825532 |
T |
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| Q |
317 |
acaatcaatatcttcaaaattattcaaaaagctatcactgcgaattcaaaaaa |
369 |
Q |
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| | | || |||||| ||| | |||||||||||||| |||||||||||| |
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| T |
42825533 |
a----ctgtttcatcaaaagtatcccaaaagctatcactgtgaattcaaaaaa |
42825581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 41980450 - 41980495
Alignment:
| Q |
57 |
aattcatgctcagcataaggggatcgggaatgaaaagtgtggagtg |
102 |
Q |
| |
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||||| |||||||||||||||||| |||| |||||||||||||||| |
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| T |
41980450 |
aattcttgctcagcataaggggattgggattgaaaagtgtggagtg |
41980495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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