View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21636_low_15 (Length: 453)
Name: NF21636_low_15
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 3206972 - 3206727
Alignment:
| Q |
19 |
gcttcaagttaaaagctatttaacaatggaattttttaacttagattattattttgcatgtaccacttgttttcgtaaatgactatattgtgcacatttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3206972 |
gcttcaagttaaaagctatttaacaatggagttttttaacttagattattattttgcatgtaccacttgttttcgtaaatgactatattgtgcacatttt |
3206873 |
T |
|
| Q |
119 |
ataatagacaacaatgtaaaatggtgatttccccaataagtcactatcttttcctcattagatatattttgcatcgacaattctaatggtatcaacaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3206872 |
ataatagacaacaatgtaaaatggtgatttccccaataagtcactatcttttcctcattagatatattttgcatcgacaattctaatggtatcaacaaaa |
3206773 |
T |
|
| Q |
219 |
atgacatccaagtccaaccatgatggtagagacatcattttgaaca |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3206772 |
atgacatccaagtccaaccatgatggtagagacatcattttgaaca |
3206727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 258 - 445
Target Start/End: Complemental strand, 3206659 - 3206472
Alignment:
| Q |
258 |
ttgaacaatcattgatgtcttgaatgctgaatgtggaatcatcatgattgatgggaatcgaaatttatgacaagttgcttcccttgaacaactttcgtgt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3206659 |
ttgaacaatcattgatgtcttgaatgctgaatgtggaatcatcatgattgatgggaatcgaaatttatgacaagttgcttcccttgcacaactttcgtgt |
3206560 |
T |
|
| Q |
358 |
gccgatgggacccttttttgtttcactgaacaagatcttaaactacttttcattttgtggaatcacgaaggattttcagtcctttgct |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3206559 |
gccgatgggacccttttttgtttcactgaacaagatcttaaactacttttcattttgtggaatcacgaaggattttcagtcctttgct |
3206472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 3200897 - 3200850
Alignment:
| Q |
114 |
attttataatagacaacaatgtaaaatggtgatttccccaataagtca |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3200897 |
attttataatagacaacaatgtaaaatggtgatttccccaataagtca |
3200850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University