View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_17 (Length: 426)
Name: NF21636_low_17
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 37978712 - 37979107
Alignment:
| Q |
18 |
ctagattaaattaattaaatgatatattaagaggggtttaattcagtttggttttttaccaaatggcaaatgtttgtgtaagtatccgtgtagatgcgtc |
117 |
Q |
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| T |
37978712 |
ctagattaaattaattaaatgatatattaagaggggtttaattcagtttggttttttgccaaatggcaaatgtttgtgtacgtatccgtgtagatgcgtc |
37978811 |
T |
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| Q |
118 |
ggtgataattcgtacctgaattctccaatctattaatttgagcatatagtgtactccatatactatatactatagtaataggcacgactttttggcttat |
217 |
Q |
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| T |
37978812 |
gttgataatgcttatctgaattctccactctattaatttgagcatatagtgtactccatatactatatactatagtaataggcacgactttttggcttat |
37978911 |
T |
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| Q |
218 |
aatataaaagttcatgtaattttatagtgatttaaaggaagtcaagaaaatttaaaaaatgtgataaatctgaatccatatatactatttagtttgaatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
37978912 |
aatataaaagttcatgtaattttatagtgatttaaaggaagtcaagaaaatttaaaaaatgtgataaatctgaatcc--atatacta-ttagtttgaatg |
37979008 |
T |
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| Q |
318 |
nnnnnnnnnnnnnnnatcgataaggagctagaagaagagatgggaataaccattcagatcttgaaatctaaatcatgcaatattttattcaattcatctg |
417 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37979009 |
--atatatatatataattgataaggagctagaagaagagatgggaataaccattcagatcttgaaatctaaatcatgcaatattttattcaattcatctg |
37979106 |
T |
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