View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_19 (Length: 414)
Name: NF21636_low_19
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_19 |
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| [»] scaffold0158 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 261 - 393
Target Start/End: Original strand, 3163974 - 3164108
Alignment:
| Q |
261 |
tgtcagactagtcgcatcctccgaatcttaagtgccagatttttgaatcaggaagtgaagatgctgtgcaccctaaaagtcaagaaggatgaatga--at |
358 |
Q |
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| T |
3163974 |
tgtcagattagtcgtatcttccgaatcttaagtgccagatttatgaataaggaagtgaagatgccatgcagcctaaaagttaagaagaatgaatgatcat |
3164073 |
T |
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| Q |
359 |
agtagtgggaagatcttttatcgatcaaaatatgt |
393 |
Q |
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| T |
3164074 |
agcagtagaaagatcttttatggatcaaaatatgt |
3164108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 158 - 372
Target Start/End: Original strand, 20807473 - 20807687
Alignment:
| Q |
158 |
gttgttaagagaattgatttgaagttaagtaaattattttggaacatacaaagatgatccctctacgcagtcgttgaatggaaaatgaaagttagataaa |
257 |
Q |
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| T |
20807473 |
gttgttaagtgaattaattgaaaatttagtaaattactttggagcagacaaagatgatccctctatgtagttattgagtagacaatgcaagccagataaa |
20807572 |
T |
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| Q |
258 |
ttatgtcagactagtcgcatcctccgaatcttaagtgccagatttttgaatcaggaagtgaagatgctgtgcaccctaaaagtcaagaaggatgaatgaa |
357 |
Q |
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| T |
20807573 |
ctatgttagataagtcgtatctccggaatcttaagtgctatatttatgaatcaagaagtgaaaatgctatgtagccttaaagttaagaaggatgaataaa |
20807672 |
T |
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| Q |
358 |
tagtagtgggaagat |
372 |
Q |
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| T |
20807673 |
tagtagtggaaagat |
20807687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 375
Target Start/End: Original strand, 960 - 1147
Alignment:
| Q |
188 |
aaattattttggaacatacaaagatgatccctctacgcagtcgttgaatggaaaatgaaagttagataaattatgtcagactagtcgcatcctccgaatc |
287 |
Q |
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| T |
960 |
aaattactttggagcagacaaagatgatccctctatgcagttattgagtagacaacgcaagccggataaactatgttagattagtcatatctcccgaatc |
1059 |
T |
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| Q |
288 |
ttaagtgccagatttttgaatcaggaagtgaagatgctgtgcaccctaaaagtcaagaaggatgaatgaatagtagtgggaagatctt |
375 |
Q |
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| T |
1060 |
ttaagtgctatatttatgaatcaggaagtgaaaatgctatgcagcctttaagttaagaaggatgaataattagtagtggaaagatctt |
1147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 99 - 379
Target Start/End: Complemental strand, 22218851 - 22218577
Alignment:
| Q |
99 |
atttataagctctcaagagaagtaagggatataagaaacactcaggattttaaggt-tgggttgttaagagaattgatttg-aagttaagtaaattattt |
196 |
Q |
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| T |
22218851 |
atttataagtgctcaggagaagtagaagatgtaagaaacactcaagattttaatgtctgagttgttaagtgaattaattggaaaattaagtaaattattt |
22218752 |
T |
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| Q |
197 |
tggaacatacaaagatgatccctctacgcagtcgttgaatggaaaatgaaagttagataaattatgtcagactagtcgcatcctccgaatcttaagtgcc |
296 |
Q |
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| T |
22218751 |
tagaacagacgaaaataacccctttacg--------gagtggacaacgcaaactagataaactatgtcagattagccacattccccgaatcttaagtgcc |
22218660 |
T |
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| Q |
297 |
agatttttgaatcaggaagtgaagatgctgtgcaccctaaaagtcaagaaggatgaatgaatagtagtgggaagatcttttat |
379 |
Q |
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| T |
22218659 |
agatttatgaatcacgaagtgaaggtgctatgcggcgtaagagtcaagaaggatgaataaagagtagtgcaaggatcttttat |
22218577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 30439867 - 30439923
Alignment:
| Q |
87 |
ggtgattaacagatttataagctctcaagagaagtaagggatataagaaacactcag |
143 |
Q |
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| T |
30439867 |
ggtgattaacagatttataagctctcaagagaagtaagggatataagaaactctcag |
30439923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 5244236 - 5244281
Alignment:
| Q |
333 |
ctaaaagtcaagaaggatgaatgaatagtagtgggaagatctttta |
378 |
Q |
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| T |
5244236 |
ctaagagttaagaaggatgaataaatagtagtggaaagatctttta |
5244281 |
T |
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