View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_2 (Length: 973)
Name: NF21636_low_2
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_2 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 866; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 866; E-Value: 0
Query Start/End: Original strand, 1 - 937
Target Start/End: Complemental strand, 36734387 - 36733450
Alignment:
| Q |
1 |
aataaaatatcaagtagatccttaatttgaccttctcctccaccaacttcctttctcctcctccttacttcttgatgctccttgataatcctctccatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36734387 |
aataaaatatcaagtagatccttaatttgaccttctcctccaccaacttcttttctcctcctccttacttcttgatgctccttgataatcctctccatca |
36734288 |
T |
|
| Q |
101 |
tagaatcaaacctgtccctaatttcctttaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccc |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36734287 |
tagaatcaaacctgtccctaatttcctctaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccc |
36734188 |
T |
|
| Q |
201 |
cgtaagatgtacagtgtcttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatcctcgaaataacgtta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36734187 |
cgtaagatgtacagtgtcttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatccttgaaataacgtta |
36734088 |
T |
|
| Q |
301 |
ttcgacaacttcaaaagctctcttccaacatcaataacctcattctccttccctttcttgagcaaaaaactaacaaaccttgttgtctcttgtctcctta |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36734087 |
ttcgacaacttcaaaagctctcttccaacatcaataacctcattctccttccctttcttgagcaaaaaactaacaaaccttgttgtctcttgtctcctta |
36733988 |
T |
|
| Q |
401 |
aaggaagaagttgactcaatgtgttaccaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatc |
500 |
Q |
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| T |
36733987 |
aaggaagaagttgactcaatgtgttaccaccaagaagttcagacatgcatattttcttgataaatttccaataaggtccatatggagcaaaggaaaaatc |
36733888 |
T |
|
| Q |
501 |
ttgtgagccatatgttagataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36733887 |
ttgtgagccatatgttagataatcaacagctgaactttgaggacggttggagaaataggtttcgtgagttttaagaaactctttagcggattctggtgtg |
36733788 |
T |
|
| Q |
601 |
gaagctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttatgaagtccttggtgaggtattgaaccaataa |
700 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36733787 |
gaagctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttgttgaaagtttgtgaagtccttggtgaggtattgaaccaataa |
36733688 |
T |
|
| Q |
701 |
ggtgaagatgtccaatgattggtaaagataatggacttggaggtaacttcgatttcttgtattttcttgtgagtatggcttttacaaaaattgttgatac |
800 |
Q |
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| T |
36733687 |
ggtgaagatgtccaatgattggtaaagataatggacttggaggtaacttcgatttcttgtattttcttgtgagtatggcttttacaaaaattgttgatac |
36733588 |
T |
|
| Q |
801 |
tagccatatgatgaaaagtaagatgtaaccttggtaatcaaccatgttattgtaaccnnnnnnnnnngttgtagtaagtaattgaaaatatgttggttac |
900 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
36733587 |
tagccatatgatgaaaagtaagatgtaaccttggtaatcaaccatgttattgtaacctttttttt---tagtagtaagtaattgaaaatatgttggttac |
36733491 |
T |
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| Q |
901 |
gctgctgaattgtatc----gtatataagaaggaaaaaact |
937 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
36733490 |
gctgctgaattgtatcgtatgtatataagaaggaaaaaact |
36733450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 559 - 673
Target Start/End: Complemental strand, 25168224 - 25168110
Alignment:
| Q |
559 |
gtttcgtgagttttaagaaactctttagcggattctggtgtggaagctacaacacaaggcatggaacctaggaaaaggtgtattataggtccatattttg |
658 |
Q |
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|||||||||||||||||||||||||| || |||||| | |||| ||| | |||||| || || ||||||||||| || ||||| |||||||||| |
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| T |
25168224 |
gtttcgtgagttttaagaaactctttggctatttctggatttgaagttactatacaaggtatagagcctaggaaaagttgaattatgggtccatattgaa |
25168125 |
T |
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| Q |
659 |
ttgaaagtttatgaa |
673 |
Q |
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| T |
25168124 |
ttgaaagcttatgaa |
25168110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 19053 - 18973
Alignment:
| Q |
153 |
atcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtcttgcaccaacttcct |
233 |
Q |
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|||||| ||||||||||||||||||||||| || | ||||||| |||| | ||| | |||| | |||||||||| |||||| |
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| T |
19053 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcct |
18973 |
T |
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