View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21636_low_22 (Length: 378)

Name: NF21636_low_22
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21636_low_22
NF21636_low_22
[»] chr4 (2 HSPs)
chr4 (19-329)||(41107960-41108272)
chr4 (64-131)||(7600923-7600990)
[»] chr7 (7 HSPs)
chr7 (20-276)||(34913795-34914051)
chr7 (20-276)||(34906274-34906533)
chr7 (19-278)||(35702390-35702636)
chr7 (55-177)||(33032677-33032799)
chr7 (55-177)||(33120237-33120359)
chr7 (58-177)||(1470600-1470719)
chr7 (215-270)||(35725680-35725737)
[»] scaffold0036 (1 HSPs)
scaffold0036 (118-273)||(19702-19857)
[»] chr5 (6 HSPs)
chr5 (57-177)||(10101036-10101156)
chr5 (57-182)||(9678699-9678824)
chr5 (57-177)||(10104839-10104959)
chr5 (57-177)||(10214390-10214510)
chr5 (58-131)||(21036232-21036305)
chr5 (58-131)||(20982827-20982899)
[»] chr6 (2 HSPs)
chr6 (61-131)||(26384421-26384491)
chr6 (50-109)||(22366684-22366743)
[»] chr3 (1 HSPs)
chr3 (58-118)||(5130615-5130675)
[»] chr8 (2 HSPs)
chr8 (58-118)||(1086910-1086970)
chr8 (60-144)||(7224365-7224449)
[»] scaffold0011 (1 HSPs)
scaffold0011 (202-256)||(17017-17071)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 329
Target Start/End: Complemental strand, 41108272 - 41107960
Alignment:
Q  19 actcaagtgtttatataacacacgcgtggagcaatagtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108272 actcaagtgtttatataacacacgcgtggagcaatagtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa 41108173  T
Q  119 ggagacaggaacatatgtctggatgatgaacaaagaccatgcgatcagagcgtgattaatggctgagatgattctcatgttgagacataatcttgtgctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108172 ggagacaggaacatatgtctggatgatgaacaaagaccatgcgatcagagcgtgattaatggctgagatgattctcatgttgagacataatcttgtgctg 41108073  T
Q  219 tagatgatcgttctcagacacatgctgtctggggtggtcgcatggtgctcttacagactccaca--accaccnnnnnnnnngtcatggttttttatacat 316  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||  || |||         |||||||||||||||||||    
T  41108072 tagatgatcgttctcagacacacgctgtctggggtggtcgcatggtgctcttacagactcaacaacacaacctttttttttgtcatggttttttatacat 41107973  T
Q  317 ggatgctaataat 329  Q
    |||||||||||||    
T  41107972 ggatgctaataat 41107960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 7600923 - 7600990
Alignment:
Q  64 ttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 131  Q
    ||||||| ||||||| ||||||||||| | |||| | ||||||||||||||||| ||| ||| |||||    
T  7600923 ttacttggacaggatttgttctataggcttgtacaattgtgtccttgatttctagggaaacatgaaca 7600990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 34914051 - 34913795
Alignment:
Q  20 ctcaagtgtttatataacacacgcgtggagcaatagtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 119  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34914051 ctcaagtgtttatataacacacacgtggaacaattgtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 34913952  T
Q  120 gagacaggaacatatgtctggatgatgaacaaagaccatgcgatcagagcgtgattaatggctgagatgattctcatgttgagacataatcttgtgctgt 219  Q
    |||||||||||||| ||||||||||||||  |||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  34913951 gagacaggaacatacgtctggatgatgaatgaagaccgtgcgatcagagcgtgattaacggcttagatgattctcatgttgagacatcatcttgtgctgt 34913852  T
Q  220 agatgatcgttctcagacacatgctgtctggggtggtcgcatggtgctcttacagac 276  Q
    ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  34913851 agatgatcgttctcagacacatgttgtctggggtggttgcacggtgctcttacagac 34913795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 34906274 - 34906533
Alignment:
Q  20 ctcaagtgtttatataacacacgcgtggagcaatagtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 119  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34906274 ctcaagtgtttatataacacacacgtggaacaattgtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaag 34906373  T
Q  120 gagacaggaacatatgtctggatgatgaacaaagaccatgcgatcagagcgtgattaatggctgagatgattctcatgttgagacataatcttgtgctgt 219  Q
    |||||||||||||| ||||||||||||||  |||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||    
T  34906374 gagacaggaacatacgtctggatgatgaatgaagaccgtgcgatcagagcgtgattaacggcttagatgattctcatgttgagacatcatcttgtgctgt 34906473  T
Q  220 agatgatcgttctcagacacatgc---tgtctggggtggtcgcatggtgctcttacagac 276  Q
    ||||||||||||||||||||||||   ||||||||||||| ||| |||||||||||||||    
T  34906474 agatgatcgttctcagacacatgcatgtgtctggggtggttgcacggtgctcttacagac 34906533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 35702390 - 35702636
Alignment:
Q  19 actcaagtgtttatataacacacgcgtggagcaatagtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa 118  Q
    |||||| |||||||||| |||||||||| | || | |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||| |||     
T  35702390 actcaaatgtttatatagcacacgcgtgaatcattggtcacgaccttacttgaacaggatctgttctataggatggtactactgtgtctatgattccta- 35702488  T
Q  119 ggagacaggaacatatgtctggatgatgaacaaagaccatgcgatcagagcgtgattaatggctgagatgattct---catgttgagacataatc---tt 212  Q
                 ||     ||||||||||  |  ||| |||||||||||||||||||| |||||||||||||||   ||||||||||||| |||   ||    
T  35702489 -------------ta-----ggatgatgaaagacaaccgtgcgatcagagcgtgattaacggctgagatgattcttctcatgttgagacatcatcatctt 35702570  T
Q  213 gtgctgtagatgatcgttctcagacacatgctgtctggggtggtcgcatggtgctcttacagactc 278  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||    
T  35702571 gtgctgtagatgatcgttctcagacacacgctgtctggggtggttgcatggtgttcttacagactc 35702636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 33032799 - 33032677
Alignment:
Q  55 gtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaacaaaga 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||     ||    
T  33032799 gtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtga 33032700  T
Q  155 ccatgcgatcagagcgtgattaa 177  Q
    || || |||||||||||||||||    
T  33032699 ccgtgtgatcagagcgtgattaa 33032677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 33120359 - 33120237
Alignment:
Q  55 gtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaacaaaga 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||     ||    
T  33120359 gtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacataaatctggatgaggatttgtga 33120260  T
Q  155 ccatgcgatcagagcgtgattaa 177  Q
    || || |||||||||||||||||    
T  33120259 ccgtgtgatcagagcgtgattaa 33120237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 1470719 - 1470600
Alignment:
Q  58 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaacaaagacca 157  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| | ||||     
T  1470719 acgaccttacttgaacatgatctattctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggtggatgaaccatgaccg 1470620  T
Q  158 tgcgatcagagcgtgattaa 177  Q
    || ||||||||| |||||||    
T  1470619 tgtgatcagagcatgattaa 1470600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 35725680 - 35725737
Alignment:
Q  215 gctgtagatgatcgttctcag--acacatgctgtctggggtggtcgcatggtgctctt 270  Q
    |||||||||||||||||||||  ||||| ||||||||||||||| ||| |||| ||||    
T  35725680 gctgtagatgatcgttctcagacacacacgctgtctggggtggttgcacggtgttctt 35725737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 118 - 273
Target Start/End: Original strand, 19702 - 19857
Alignment:
Q  118 aggagacaggaacatatgtctggatgatgaacaaagaccatgcgatcagagcgtgattaatggctgagatgattctcatgttgagacataatcttgtgct 217  Q
    ||||||||||||||||||||| |||||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  19702 aggagacaggaacatatgtctagatgatgaacgaagaccgtgagatcagagcgtgattaacggctgagatgattctcatgttaagacatcatcttgtgct 19801  T
Q  218 gtagatgatcgttctcagacacatgctgtctggggtggtcgcatggtgctcttaca 273  Q
    |||||| |||||||||||||| | ||| |||||||||| |||| ||||||||||||    
T  19802 gtagataatcgttctcagacaaacgctatctggggtggccgcacggtgctcttaca 19857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 10101156 - 10101036
Alignment:
Q  57 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaacaaagacc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||| | ||||    
T  10101156 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatacgtctggtggatgaaccatgacc 10101057  T
Q  157 atgcgatcagagcgtgattaa 177  Q
     || |||||||||||||||||    
T  10101056 gtgtgatcagagcgtgattaa 10101036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 57 - 182
Target Start/End: Original strand, 9678699 - 9678824
Alignment:
Q  57 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaacaaagacc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||  | |||     
T  9678699 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttcaaaggagacaggaacatacgtctggtggatgaatcatgact 9678798  T
Q  157 atgcgatcagagcgtgattaatggct 182  Q
     || ||||||||||||||||| ||||    
T  9678799 gtgtgatcagagcgtgattaacggct 9678824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 10104959 - 10104839
Alignment:
Q  57 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaacaaagacc 156  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||| |||| ||||||  ||||||| | ||||    
T  10104959 cacgaccttacttgaacaggatctgttctataggattatactactgtgtccttgatttctaagaagacaggagcatacgtctggtggatgaaccatgacc 10104860  T
Q  157 atgcgatcagagcgtgattaa 177  Q
     || |||||||||||||||||    
T  10104859 gtgtgatcagagcgtgattaa 10104839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 10214390 - 10214510
Alignment:
Q  57 cacgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatgatgaacaaagacc 156  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||  |||||     ||||    
T  10214390 cacgaccttacttgaacaggatctgttctataggattgtactactgtgtccttgatttctaaggagataggaacatatgtctggtagatgagttgtgacc 10214489  T
Q  157 atgcgatcagagcgtgattaa 177  Q
     || |||||||||||||||||    
T  10214490 gtgtgatcagagcgtgattaa 10214510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 21036305 - 21036232
Alignment:
Q  58 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  21036305 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggaaacagaaaca 21036232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 20982899 - 20982827
Alignment:
Q  58 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 131  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||| |||||||||||||||||| || |||||    
T  20982899 acgaccttact-gaacaggatctgatctataggatcgtactattgtatccttgatttctaaggaggcacgaaca 20982827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 26384421 - 26384491
Alignment:
Q  61 accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaaca 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26384421 accttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacagaaaca 26384491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 22366684 - 22366743
Alignment:
Q  50 caatagtcacgaccttacttgaacaggatctgttctataggatcgtactactgtgtcctt 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22366684 caatagtcacgaccttatttgaacaggatctgttctataggatcgtactactgtgtcctt 22366743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 5130615 - 5130675
Alignment:
Q  58 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa 118  Q
    ||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||||    
T  5130615 acgaccttacttgaacaagatctcttttataggatcgtattactgtgtccttgatttctaa 5130675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 1086970 - 1086910
Alignment:
Q  58 acgaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaa 118  Q
    ||||||||||||||||| ||||| || |||| |||||||||| ||||||||||||||||||    
T  1086970 acgaccttacttgaacaagatctattttataagatcgtactattgtgtccttgatttctaa 1086910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 7224365 - 7224449
Alignment:
Q  60 gaccttacttgaacaggatctgttctataggatcgtactactgtgtccttgatttctaaggagacaggaacatatgtctggatga 144  Q
    |||||||||| || | ||| |||||||||||||||||  | || |||||||||||||||||||||| |||||||  |||||||||    
T  7224365 gaccttacttaaatatgatttgttctataggatcgtaacattgcgtccttgatttctaaggagacatgaacataaatctggatga 7224449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 256
Target Start/End: Original strand, 17017 - 17071
Alignment:
Q  202 gacataatcttgtgctgtagatgatcgttctcagacacatgctgtctggggtggt 256  Q
    ||||| ||||||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  17017 gacatcatcttgtactgtggatgatcgttctcagacacatactgtcgggggtggt 17071  T

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