View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21636_low_23 (Length: 367)
Name: NF21636_low_23
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_23 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 48 - 345
Target Start/End: Original strand, 6309869 - 6310166
Alignment:
| Q |
48 |
ctttataatccaattcatcataactccatctcaaaataaaatcaatttcagcatttggaacttctttcagcttagctaatgcacaaccccattctatttc |
147 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||| || |||||||||||||||| ||||||| ||||||||| ||||| | ||||||| ||||||| ||||| |
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| T |
6309869 |
ctttatcatccaattcattataactcaatctgaatataaaatcaatttcagtgtttggaatttctttcagtttagccagtgcacaatcccattcaatttc |
6309968 |
T |
|
| Q |
148 |
acttttacatcgaagtgatgatcccaacactgtcaaagctaaagggttgcctttggcgtaatcaattgctctttttgagagctccacatatccatcctta |
247 |
Q |
| |
|
||||||||| |||||| |||||||||| ||| ||||||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
6309969 |
acttttacaacgaagtaatgatcccaatactttcaaagctaaaggatttcctttggcataatcaactgctctttttgagagctccacatatccatcctta |
6310068 |
T |
|
| Q |
248 |
ggcaagactttgtcaaaagcattcaagctaaaaagttggagggaatttcgggagttcatcttcttaacttcataaatttgttcaattcctccacttat |
345 |
Q |
| |
|
|| ||||||| |||||||||||||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
6310069 |
ggtgagacttttccaaaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaacttcataaattttttcaatccctccacttat |
6310166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 48 - 345
Target Start/End: Complemental strand, 14405419 - 14405122
Alignment:
| Q |
48 |
ctttataatccaattcatcataactccatctcaaaataaaatcaatttcagcatttggaacttctttcagcttagctaatgcacaaccccattctatttc |
147 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| || ||| |||||||||| ||||||| || |||||| |||||||||||||| ||||||| ||||| |
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|
| T |
14405419 |
ctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttggaatttttttcagtttagctaatgcacagtcccattcaatttc |
14405320 |
T |
|
| Q |
148 |
acttttacatcgaagtgatgatcccaacactgtcaaagctaaagggttgcctttggcgtaatcaattgctctttttgagagctccacatatccatcctta |
247 |
Q |
| |
|
||||||||| |||||| | |||||||| ||| |||||||||| ||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
14405319 |
acttttacaacgaagtaaagatcccaatactttcaaagctaacgggtttccgttggcataatcaactgctctttttgagagctccacatatccatcctta |
14405220 |
T |
|
| Q |
248 |
ggcaagactttgtcaaaagcattcaagctaaaaagttggagggaatttcgggagttcatcttcttaacttcataaatttgttcaattcctccacttat |
345 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| | | |||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
14405219 |
ggcgagactttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaattttgtcgattcctccacttat |
14405122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 55 - 345
Target Start/End: Original strand, 5607445 - 5607735
Alignment:
| Q |
55 |
atccaattcatcataactccatctcaaaataaaatcaatttcagcatttggaacttctttcagcttagctaatgcacaaccccattctatttcactttta |
154 |
Q |
| |
|
||||||||||| | ||||| ||| || ||| |||||||||| ||||| | || |||||| ||| ||||||||||| |||||||| ||||||||||| |
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|
| T |
5607445 |
atccaattcattaaaactcattctaaatatagaatcaatttcgttgtttggcatttttttcagtttatctaatgcacaatcccattctttttcactttta |
5607544 |
T |
|
| Q |
155 |
catcgaagtgatgatcccaacactgtcaaagctaaagggttgcctttggcgtaatcaattgctctttttgagagctccacatatccatccttaggcaaga |
254 |
Q |
| |
|
|| |||||| |||||||||| ||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
5607545 |
caacgaagtaatgatcccaatactttcaaagctaaagggtttcctctggcataatcaattgctctttttgagagctccacatatccatccttaggtgaga |
5607644 |
T |
|
| Q |
255 |
ctttgtcaaaagcattcaagctaaaaagttggagggaatttcgggagttcatcttcttaacttcataaatttgttcaattcctccacttat |
345 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |
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|
| T |
5607645 |
ctttgtcaaaagcattcaagctaaaaattctgagggaatttcgggagttcatcttcttaacttcatatattgtcttaattcctccacttat |
5607735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 55 - 345
Target Start/End: Complemental strand, 5627925 - 5627635
Alignment:
| Q |
55 |
atccaattcatcataactccatctcaaaataaaatcaatttcagcatttggaacttctttcagcttagctaatgcacaaccccattctatttcactttta |
154 |
Q |
| |
|
||||||||||| | ||||| ||| || ||| |||||||||| ||||| | || |||||| ||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
5627925 |
atccaattcattaaaactcattctaaatatagaatcaatttcgttgtttggcatttttttcagtttatctaatgcacaatcccattctttttcactttta |
5627826 |
T |
|
| Q |
155 |
catcgaagtgatgatcccaacactgtcaaagctaaagggttgcctttggcgtaatcaattgctctttttgagagctccacatatccatccttaggcaaga |
254 |
Q |
| |
|
|| |||||| |||||||||| ||| |||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5627825 |
caacgaagtaatgatcccaatactttcaaagctaaagggtttcctctggcataatcaattgctctttttgagagctccacatatccatccttaggtgaga |
5627726 |
T |
|
| Q |
255 |
ctttgtcaaaagcattcaagctaaaaagttggagggaatttcgggagttcatcttcttaacttcataaatttgttcaattcctccacttat |
345 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |
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|
| T |
5627725 |
ctttgtcaaaagcattcaagctaaaaattctgagggaatttcgggagttcatcttcttaacttcatatattgtcttaattcctccacttat |
5627635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 48 - 345
Target Start/End: Complemental strand, 13165583 - 13165286
Alignment:
| Q |
48 |
ctttataatccaattcatcataactccatctcaaaataaaatcaatttcagcatttggaacttctttcagcttagctaatgcacaaccccattctatttc |
147 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| | || ||||||||| ||||| | || || | ||| |||| | ||||||| |||||||||||| |
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|
| T |
13165583 |
ctttatcatccaattcattataactccatcttagtatcctatcaatttcggcattggaaattttctccagtttagacagtgcacaattccattctatttc |
13165484 |
T |
|
| Q |
148 |
acttttacatcgaagtgatgatcccaacactgtcaaagctaaagggttgcctttggcgtaatcaattgctctttttgagagctccacatatccatcctta |
247 |
Q |
| |
|
|||||| || ||||||||||||||||| ||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||| |
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|
| T |
13165483 |
acttttgcaacgaagtgatgatcccaaaactttcagagctaaagggatgcctttggcgtaatcaatcgctctttttgagagctccacaaatccctcctta |
13165384 |
T |
|
| Q |
248 |
ggcaagactttgtcaaaagcattcaagctaaaaagttggagggaatttcgggagttcatcttcttaacttcataaatttgttcaattcctccacttat |
345 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13165383 |
gggaagacagtgtcaaaagcattcaagcagaaaagctggagggaattttgggagttcatcttcttaacttcataaatttcttcaattcctccacttat |
13165286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 55 - 345
Target Start/End: Complemental strand, 5550484 - 5550194
Alignment:
| Q |
55 |
atccaattcatcataactccatctcaaaataaaatcaatttcagcatttggaacttctttcagcttagctaatgcacaaccccattctatttcactttta |
154 |
Q |
| |
|
||||||||||| | ||||| |||| || ||| ||||||||||| ||||| | || | |||| |||||| |||||||| |||||||| ||||| ||||| |
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|
| T |
5550484 |
atccaattcattaaaactcaatctgaatatagaatcaatttcattgtttggtatttttctcagtttagctgatgcacaatcccattctttttcattttta |
5550385 |
T |
|
| Q |
155 |
catcgaagtgatgatcccaacactgtcaaagctaaagggttgcctttggcgtaatcaattgctctttttgagagctccacatatccatccttaggcaaga |
254 |
Q |
| |
|
|| | |||| |||||||||| ||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5550384 |
caactaagtaatgatcccaatacttgtaaagctaaagggtttcctctggcataatcaattgctctttttgagagctccacatatccatccttaggtgaga |
5550285 |
T |
|
| Q |
255 |
ctttgtcaaaagcattcaagctaaaaagttggagggaatttcgggagttcatcttcttaacttcataaatttgttcaattcctccacttat |
345 |
Q |
| |
|
|||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |
|
|
| T |
5550284 |
ctttgttaaaagcattcaaacaaaaaagtcggagggaatttcgggagttcatcttcttaacttcatatattgtcttaattcctccacttat |
5550194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 48 - 342
Target Start/End: Complemental strand, 32633969 - 32633675
Alignment:
| Q |
48 |
ctttataatccaattcatcataactccatctcaaaataaaatcaatttcagcatttggaacttctttcagcttagctaatgcacaaccccattctatttc |
147 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||| || ||| ||||| ||||| |||| ||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
32633969 |
ctttatcatctaattcattataactccatctcattatcttatcgatttctgcattgggaatttccttcagtttagctaatgcacagttccattctatttc |
32633870 |
T |
|
| Q |
148 |
acttttacatcgaagtgatgatcccaacactgtcaaagctaaagggttgcctttggcgtaatcaattgctctttttgagagctccacatatccatcctta |
247 |
Q |
| |
|
|||||| | | ||| |||||||||| ||| | | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| |
|
|
| T |
32633869 |
acttttgctacaaagaaatgatcccaaaacttttagagctaaagggttgcctttggcgtaatcaatcactctttctgagagctccacatatccctcctta |
32633770 |
T |
|
| Q |
248 |
ggcaagactttgtcaaaagcattcaagctaaaaagttggagggaatttcgggagttcatcttcttaacttcataaatttgttcaattcctccact |
342 |
Q |
| |
|
|| |||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||| | ||||||| || ||||| |||||||||||||| |
|
|
| T |
32633769 |
ggtaagactttgtcaaaagcattgaagctgaaaagctggagggagtttcgagagttcatttctttaacttgatgaattttgtcaattcctccact |
32633675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 5571848 - 5571777
Alignment:
| Q |
274 |
gctaaaaagttggagggaatttcgggagttcatcttcttaacttcataaatttgttcaattcctccacttat |
345 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5571848 |
gctaaaaagttggagggaattttgggagttcatcttcttaacttcataaatttcgtcaattcctccacttat |
5571777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 48 - 345
Target Start/End: Original strand, 13434 - 13731
Alignment:
| Q |
48 |
ctttataatccaattcatcataactccatctcaaaataaaatcaatttcagcatttggaacttctttcagcttagctaatgcacaaccccattctatttc |
147 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| || ||| |||||||||| ||||||| || |||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
13434 |
ctttatcatccaattcatcataactcaatctgaatatagaatcaatttcgttgtttggaatttttttcagtttagctaatgcacagtcccattcaatttc |
13533 |
T |
|
| Q |
148 |
acttttacatcgaagtgatgatcccaacactgtcaaagctaaagggttgcctttggcgtaatcaattgctctttttgagagctccacatatccatcctta |
247 |
Q |
| |
|
||||||||| |||||| | |||||||| ||| |||||||||| ||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13534 |
acttttacaacgaagtaaagatcccaatactttcaaagctaacgggtttccgttggcataatcaactgctctttttgagagctccacatatccatcctta |
13633 |
T |
|
| Q |
248 |
ggcaagactttgtcaaaagcattcaagctaaaaagttggagggaatttcgggagttcatcttcttaacttcataaatttgttcaattcctccacttat |
345 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| | | |||||| ||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
13634 |
ggcgagactttgtcaaaagcattcatgctaaaaagcttaacggaattgcgggagttcatcttcttaacttcataaattttgtcgattcctccacttat |
13731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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