View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_24 (Length: 328)
Name: NF21636_low_24
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 4 - 312
Target Start/End: Complemental strand, 36574288 - 36573980
Alignment:
| Q |
4 |
aataatatcctgtaaacaacaaattaataccaatttaattgcgagaacaattaaatttaatcgaatggtctacaacgggcttgatcgaacggtttacacc |
103 |
Q |
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| T |
36574288 |
aatactatcctgtaaacaacaaattaataccaatttaattgcgagaacaattaaatttaatcgaatggtctacaacgggctcaatcgaacggtttacacc |
36574189 |
T |
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| Q |
104 |
atgttgtaccattgaagacgaagaagacaatatctaatttattaaagatacacgggagagtttaatgtttatcattggatttttggtacatgcatggtga |
203 |
Q |
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| T |
36574188 |
atgttgtaccattgaagacgaagaagacaatatctaatttattaaagatacacgggagagtttaatgtttatcattggatttttggtacatgcatggtga |
36574089 |
T |
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| Q |
204 |
agtgtagaggacttaccatgagaaaatgaggaaagccattgctaattgtctattggatgtggctcttttgtattcttctttagactttatgcaaatgcac |
303 |
Q |
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| T |
36574088 |
agagtagaggacttaccatgagaaaatgaggaaagccattgctaattgtctattggatgtggctcttttgtattcttctttagactttatgcaaatgcac |
36573989 |
T |
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| Q |
304 |
ccaccaagt |
312 |
Q |
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| T |
36573988 |
ccaccaagt |
36573980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 288
Target Start/End: Original strand, 2548899 - 2548973
Alignment:
| Q |
214 |
acttaccatgagaaaatgaggaaagccattgctaattgtctattggatgtggctcttttgtattcttctttagac |
288 |
Q |
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| T |
2548899 |
acttaccaagagaaaatgagaaaagccatagataattgtttattggctgtggctgatctgtattggtctttagac |
2548973 |
T |
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