View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21636_low_25 (Length: 321)
Name: NF21636_low_25
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 52964489 - 52964190
Alignment:
| Q |
19 |
catcctggctcaaatctactctctctaccttcataacagacactttcagagtgaaaatgcaattcaacttcaaccatacttgcatttcatctttcatcac |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52964489 |
catcctggctcaaatctactttctctaccttcataacagacactttcagagtgaaaatgcaattcaacttcaaccatactttcatttcatctttcatcac |
52964390 |
T |
|
| Q |
119 |
tagatagcatgatgtattatatattttgggcaccatattgttgccaatttataataaaacagagatggatcgtgaatggttggaatccttaacttttgac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52964389 |
tagatagcatgatgtattatatattttgggcaccatattgttgccaatttataataaaacagagatggatcgtgaatggttggaatccttaacttttgac |
52964290 |
T |
|
| Q |
219 |
acgtgttcaaatatgattgagtgattaattccctgaaatattgttatcaaacagatgcacattgaccccacgtgctatgaaccttttcctatgcttctcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||| |||| |
|
|
| T |
52964289 |
acgtgttcaaatatgattgagtgattaattccctgaaatattgttagcaaacagatacacattgaccccacgtgctatgaactttttcccatgctgctcc |
52964190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 52969610 - 52969511
Alignment:
| Q |
19 |
catcctggctcaaatctactctctctaccttcataacagacactttcagagtga---------aaatgcaattcaacttcaaccatacttgcatttcatc |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52969610 |
catcctggctcaaatccactctctctaccttcatatcagacactttcagagtgaataacctacaaatgcaattcaacttcaaccacacttgcatttcatc |
52969511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 53911810 - 53911745
Alignment:
| Q |
110 |
tttcatcactagatagcatgatgtat----tatatattttgggcaccatattgttgccaatttata |
171 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
53911810 |
tttcatcactggatagcatgatgtatgtattatatattttgagcatcatattgttgccaatttata |
53911745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University