View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_30 (Length: 261)
Name: NF21636_low_30
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_30 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 41757176 - 41756916
Alignment:
| Q |
1 |
aaactgtatgcaatttgggtattgatcaactatatatgtcgcacatacaacagttgtagaacccttagatctagaaagagaacatttttctctaaatcga |
100 |
Q |
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| T |
41757176 |
aaactgtatgcaatttgggtattgatcaactatatatgtcgcacatacaacagttgtagaacccttagatctagaaagagaacatttttctctaaatcga |
41757077 |
T |
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| Q |
101 |
acttgacttggttacaagttagttgtgattagttgaaaattgatagaatggaaaagctcgattataatgagtgtatgatacacttttagagtgatcttta |
200 |
Q |
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| T |
41757076 |
acttgacttggttacaagttagttgtgattagttgaaaattgatagaatggaaaagctcgattataatgagtgtatgatacacttttagagtgatcttta |
41756977 |
T |
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| Q |
201 |
ctaagctaactgatcataaccaatttcaaactaatcataactaacttgtaactacctcaaa |
261 |
Q |
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| T |
41756976 |
ctaagctaactgatcataaccaatttcaaactaatcataactaacttgtaactacctcaaa |
41756916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 34732721 - 34732642
Alignment:
| Q |
136 |
aaaattgatagaatggaaaagctcgattataatgagtgtatgatacac-ttttagagtgatctttactaagctaactgat |
214 |
Q |
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| T |
34732721 |
aaaattgatataatgaaaaagtttgattataatgagtgtaggatacactttttatagtgatcctaactaagcttactgat |
34732642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 31677332 - 31677384
Alignment:
| Q |
202 |
taagctaactgatcataaccaatttcaaactaatcataactaacttgtaacta |
254 |
Q |
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| T |
31677332 |
taagctaactaattataaccaaatttaaactaatcataactaatttataacta |
31677384 |
T |
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