View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_32 (Length: 249)
Name: NF21636_low_32
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_32 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 249
Target Start/End: Complemental strand, 36735551 - 36735325
Alignment:
| Q |
23 |
aggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcagcaagatttgtttgcacaacatgcaaagcc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735551 |
aggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcagcaagatttgtttgcacaacatgcaaagcc |
36735452 |
T |
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| Q |
123 |
aatgatgttccagggcatgctcttcttccactcccaaatggaatcaagtgaaaatgttgacccctcacatctaaatttccaacttcattaataaaccttt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735451 |
aatgatgttccagggcatgctcttcttccactcccaaatggaatcaaatgaaaatgttgacccctcacatctaaatttccaacttcattaataaaccttt |
36735352 |
T |
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| Q |
223 |
ctggcctaaactcaagtggattatccc |
249 |
Q |
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| T |
36735351 |
ctggcctaaactcaagtggattatccc |
36735325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 25869 - 25649
Alignment:
| Q |
26 |
tttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcagcaagatttgtttgcacaacatgcaaagccaat |
125 |
Q |
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| T |
25869 |
tttctcttccatgctaactgttccattaccacc---aaccttcaattcaaaacactgaataatagcagcaagatttgttggaacaacttgaagcgcgaat |
25773 |
T |
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| Q |
126 |
gatgttccagggcatgctcttcttccactcccaaatggaatcaagtgaaaatgttgacccctcacatctaaatttccaacttcattaataaacctttctg |
225 |
Q |
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|| || ||||| || |||||||||||| |||||||| || || || |||| ||| ||||| | ||| || || ||||| | |||||||| |||| |
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| T |
25772 |
gaggtaccaggacaagctcttcttccaaatccaaatggtataaattggaaattttgtccccttagatcaaacttattcccttcactcataaacctctctg |
25673 |
T |
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| Q |
226 |
gcctaaactcaagtggattatccc |
249 |
Q |
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| T |
25672 |
gtttaaactcaagtggattttccc |
25649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 12237 - 12159
Alignment:
| Q |
23 |
aggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcagcaagatttgtt |
104 |
Q |
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||||||||||||||| ||||| | |||| |||||| ||| |||||||||||||| |||||||| ||||||||||||||| |
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| T |
12237 |
aggtttctcttccatgttaactgttccatcaccacc---aactttccattcaaaacactgaatcattgcagcaagatttgtt |
12159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 20020 - 19946
Alignment:
| Q |
26 |
tttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcagcaagatttgt |
103 |
Q |
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| T |
20020 |
tttctcatccatgttaacttttccattaccacc---aaccttccattcaaaacactgaatcattgcggcaagatttgt |
19946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 24941237 - 24941163
Alignment:
| Q |
26 |
tttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcagcaagatttgt |
103 |
Q |
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|||||||||||| ||||| ||||||||||| | ||| |||||||||||||| |||||||| |||||||||||||| |
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| T |
24941237 |
tttctcttccatgttaactttcccattaccatc---aacattccattcaaaacactgaatcattgcagcaagatttgt |
24941163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 25169675 - 25169599
Alignment:
| Q |
24 |
ggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcagcaagatttgt |
103 |
Q |
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|||||||||||||| | ||| ||||||||||| | ||| |||||||||||||| |||||||| |||||||||||||| |
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| T |
25169675 |
ggtttctcttccatgtcaactttcccattaccatc---aacattccattcaaaacactgaatcattgcagcaagatttgt |
25169599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 249
Target Start/End: Original strand, 38807637 - 38807754
Alignment:
| Q |
132 |
ccagggcatgctcttcttccactcccaaatggaatcaagtgaaaatgttgacccctcacatctaaatttccaacttcattaat-aaacctttctggccta |
230 |
Q |
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|||||||| |||||||||||| | |||||||| || || || |||| ||| |||||||||||||| || |||||| | || |||||| || |||||| |
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| T |
38807637 |
ccagggcaagctcttcttccagttccaaatggtataaattggaaattttgtcccctcacatctaacttattcacttcactcataaaacctctc-ggccta |
38807735 |
T |
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| Q |
231 |
aactcaagtggattatccc |
249 |
Q |
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| T |
38807736 |
aactcaagtggattctccc |
38807754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 9611 - 9688
Alignment:
| Q |
24 |
ggtttctcttccatattaacaatcccattaccacctttaaccttccattcaaaacattgaatcatagcagcaagatttgtt |
104 |
Q |
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|||||||||||||| ||||| | |||| ||||| |||||||||| | ||||||||||||||| ||||||||||||||| |
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| T |
9611 |
ggtttctcttccatgttaactgttccatcaccac---taaccttccaataaaaacattgaatcattgcagcaagatttgtt |
9688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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