View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_33 (Length: 248)
Name: NF21636_low_33
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41757431 - 41757666
Alignment:
| Q |
1 |
cgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagat |
100 |
Q |
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| T |
41757431 |
cgggccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagat |
41757530 |
T |
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| Q |
101 |
gaagatcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttg |
200 |
Q |
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| T |
41757531 |
gaagatcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttaagaaaaagcaagttctgtctttgtcctagtgggtacgaggttg |
41757630 |
T |
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| Q |
201 |
caagtccaagagtggtggaagcaatatacacaggtt |
236 |
Q |
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| T |
41757631 |
caagtccaagagtggtggaagcaatatacacaggtt |
41757666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 41765518 - 41765749
Alignment:
| Q |
5 |
ccatcaccatctaagcgatcagttttggctttcttcgccggtggggttcatgggcccgttaggcctgttctacttgaacattgggaacacaaagatgaag |
104 |
Q |
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| T |
41765518 |
ccatcaccatctaagagatcaattttggctttcttcgctggtgggcttcatggggatattaggaatgttctacttgaacattgggaacacaaagatgaag |
41765617 |
T |
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| Q |
105 |
atcttcaagttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaag |
204 |
Q |
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| T |
41765618 |
atattcaagttcacaagtaccttccaaagggtgtgtcttactatgctatgttgagaaaaagcaagttttgtctttgtcctagtgggtgggaggttgcaag |
41765717 |
T |
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| Q |
205 |
tccaagagtggtggaagcaatatacacaggtt |
236 |
Q |
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| T |
41765718 |
tccaagagtggtggaagcaatatacacaggtt |
41765749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 26973235 - 26973139
Alignment:
| Q |
114 |
ttcacaagtaccttccaaagggtgtgtcttactatgatatgttgagaaaaagcaagttctgtctttgtcctagtgggtacgaggttgcaagtccaag |
210 |
Q |
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|||| ||||| |||||||||||||| ||||||||||| ||| ||||||| |||||||||||||| ||||||||||| || ||||| || |||||||| |
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| T |
26973235 |
ttcaaaagtatcttccaaagggtgtttcttactatgaaatgctgagaaagagcaagttctgtctctgtcctagtggttatgaggtggctagtccaag |
26973139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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