View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_35 (Length: 236)
Name: NF21636_low_35
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_35 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 743657 - 743892
Alignment:
| Q |
1 |
taaggaaaccctacttaactaatagcatgtgtcaatactcagttttatgtgatggtgataattacataataagcgtgtatacaatttgaagaaaaacaag |
100 |
Q |
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| T |
743657 |
taaggaaaccctacttaactaatagcatgtgtcaatactcagttttatgtgatggtgataattacataataagcggtaatacaatttgaagaaaaacaag |
743756 |
T |
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| Q |
101 |
cataacaagagtgttacgtacctttgatttcagaagactaaagttttgctcttctttttctgtgacaactttgaaagcaagtgaacctctatttatatag |
200 |
Q |
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| T |
743757 |
cataacaagagtgttacgtacctttgatttcagaaaactaaagttttgctcttctttttctgtgacaactttgaaagcaagtgaacctctatttatatag |
743856 |
T |
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| Q |
201 |
aaccgaagcaggaaagttcttgtttaaatatttttt |
236 |
Q |
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| T |
743857 |
aaccgaagcaggaaagttcttgtttaaatatttttt |
743892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 42451062 - 42451194
Alignment:
| Q |
116 |
acgtacctttgatttcagaagactaaag----ttttgctcttctt-tttctgtgacaactttgaaagcaagtgaacctctatttatatagaac------- |
203 |
Q |
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| T |
42451062 |
acgtacctttgatttcaaaagaccaatgaatgtttttctcttcttctttctgtgacaatttggaaagcaagtgatcgactatttatataggactatagga |
42451161 |
T |
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| Q |
204 |
cgaagcaggaaagttcttgtttaaatatttttt |
236 |
Q |
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| T |
42451162 |
ccgagcaggaaagttcttgtttaaatatttttt |
42451194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 42451007 - 42451060
Alignment:
| Q |
1 |
taaggaaaccctacttaactaat----agcatgtgtcaatactcagttttatgt |
50 |
Q |
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| T |
42451007 |
taaggaaaccctacttaactaattaatagcctgtgtcaatactcagttttatgt |
42451060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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