View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_36 (Length: 231)
Name: NF21636_low_36
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_36 |
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| [»] scaffold0102 (3 HSPs) |
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Alignment Details
Target: scaffold0102 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 33961 - 33866
Alignment:
| Q |
74 |
tgcagctgtaaaaactaaggcttctgcagttttagaacttgtggactcatttctggtgaaaaaatctttgaagagactctccatactctcttggaa |
169 |
Q |
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| T |
33961 |
tgcagctgtagaaactaaggcttctgcagttttagaacttgtggactcatttctggtgaaaaaatctttgaagagactctccatactctcttggaa |
33866 |
T |
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Target: scaffold0102; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 33976 - 34057
Alignment:
| Q |
1 |
tgagaatcagccaggataaatccacaaag--atatttgaaagacctgctgggtttctacctagttggacggagattgcagct |
80 |
Q |
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| T |
33976 |
tgagaatcagctaggataaatccacaaaactatatttgaaagacctgctgggtttctacctagttagacggagattgcagct |
34057 |
T |
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Target: scaffold0102; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 33610 - 33558
Alignment:
| Q |
161 |
ctcttggaaagcactctttgctggagggtttgacttggtagttagagcattct |
213 |
Q |
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| T |
33610 |
ctcttggaaagcactctttgctggagggtttggcttggtagtaagagcattct |
33558 |
T |
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