View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_37 (Length: 229)
Name: NF21636_low_37
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 4178048 - 4177853
Alignment:
| Q |
14 |
gtaactatttttaatgtcacacacatgattgattttatttatatcatatcatgcaggagacactaccttgaatttcctcctgaagtaaactttaagaagc |
113 |
Q |
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| T |
4178048 |
gtaactatttataatgtcacacacatgattgattttatttatatcat-----gcaggagacactaccttgaatttcctcctaaagtaaactttaagaagc |
4177954 |
T |
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| Q |
114 |
tgttgcaatctaataagcacttattagagttgagccgaagaccttttccaagtttggattcttcattttttggtataccattaattacaccaccatctct |
213 |
Q |
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| T |
4177953 |
tgttgcaatctaataagcacttattagagttgagccaaagaccttttccaagtttggattcttcattttttggtataccattaattacaccaccatctct |
4177854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 4078045 - 4078196
Alignment:
| Q |
63 |
catgcaggagacactaccttgaatttcctcctgaagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccgaagaccttttcc |
162 |
Q |
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| T |
4078045 |
catgcaggagacactatcttgaatttcctcctggagtaaactttaagaagctgttgcaatctaataagcacttattagagttgagccaaagaccttttcc |
4078144 |
T |
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| Q |
163 |
aagtttggattcttcattttttggtataccattaattacaccaccatctctg |
214 |
Q |
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| T |
4078145 |
aagtttggattcttcattttttggtataccattaattacaccaccatctctg |
4078196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 4077958 - 4077997
Alignment:
| Q |
14 |
gtaactatttttaatgtcacacacatgattgattttattt |
53 |
Q |
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| T |
4077958 |
gtaactatttttaatgtcacacatatgattgattttattt |
4077997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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