View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21636_low_7 (Length: 581)
Name: NF21636_low_7
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 174 - 521
Target Start/End: Original strand, 27197283 - 27197629
Alignment:
| Q |
174 |
acatatatgtggtaacaatagtgtgggttcagctatcgttattagcgttaagatctcgttgataatgatgatctatatcctaactttggtgaacctcaac |
273 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
27197283 |
acatatatgtggtagcaatagtgtgggttcaactatcgttattagcgttaagatctcgttgataatgatgatctatattctaactttggtgagccccaac |
27197382 |
T |
|
| Q |
274 |
acatttaatttccataatnnnnnnntatatgatctacaaattggtgagggtgtacttatttttgcattttaaacatcataaattcannnnnnnncgcact |
373 |
Q |
| |
|
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27197383 |
acatttaatttccataataaaaaaacataagaactacaaattggtgagggtgtacttatttttgcattttaaacatcataaattcattttttt-cgcact |
27197481 |
T |
|
| Q |
374 |
tcaaacctaagcggccctaccttactcattttcacaatacaaacttctctttaaacctaaattctctcaactcaaactcttagaaactccactttccata |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27197482 |
tcaaacctaagcggccctaccttactcattttcacaatacaaacttctctttaaacctaaattctctcaactcaaactcttagaaactcccctttccata |
27197581 |
T |
|
| Q |
474 |
ctcaccaacaacgacctctcaagcgccgccaccacatcatcgtgagac |
521 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27197582 |
ctcaccaacaacggcctctcaagcgccgccaccacatcatcgtgagac |
27197629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 27196952 - 27197056
Alignment:
| Q |
24 |
agttcttttcatcaaacaccacacacaagagaaagtatctttgaatagagaagcataaatgcaaaaacaccacacagaggagaaagcttctatgaatgga |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27196952 |
agttcttttcatcaaacaccacacacaagagaaagtatctatgaatagagaagcataaatgcaaaaacaccacacagaggagaaaacttctatgaatgga |
27197051 |
T |
|
| Q |
124 |
gaagc |
128 |
Q |
| |
|
||||| |
|
|
| T |
27197052 |
gaagc |
27197056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University