View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_8 (Length: 575)
Name: NF21636_low_8
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 21019116 - 21019677
Alignment:
| Q |
1 |
gatgatttggtggaaaatattaaagttctatcgtgatattggagtttgagtaagttaaaaatcacgtcatgtcatgtctttactatgagtggtgttcgaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
21019116 |
gatgatttggtggaaaatattaaagttctatcatggtattggagtttgagtaagttaaaaatcacgtca-----tgtctttactatgagtggtgttggaa |
21019210 |
T |
|
| Q |
101 |
tcctcgggaatgtttgattaggtaacagtcggttttggtggagtttagtggcagggggagcttttggcaggcagcagcacctgttgtgtggtctggcacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21019211 |
tcctcgggaatgtttgattaggtaacagtcggttttggtggagttttgtggcagggggagcttttggcaggcagcagcacctgttgtgtggtctggcacg |
21019310 |
T |
|
| Q |
201 |
gctgctgtgctgctgttaactgtttttggtggctggcagtatggttttgttgctgcagattgtcctggtgcggtgctgttctgttagtttggagctttgc |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
21019311 |
gctgctgtgctgctgttatctgtttttggtggctggcagtatggttttgttgctgcagattgtgctggtgcggtgctgttctgttagtttggagctttgc |
21019410 |
T |
|
| Q |
301 |
cttgtaactgctttgtagnnnnnnnnngggttgggtgtgtagtgtaagggttgccctgtactactgata---ggggccttggctgtttgttcttttcgtt |
397 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21019411 |
cttgtaactgctttgtagtttttttttgggttgggtgtgtagtgtaagggttgccctgtactactgatacgtggggccttggctgtttgttcttttcgtt |
21019510 |
T |
|
| Q |
398 |
ttcggctccattcttctcttcttgagagttttggatgcattaataatatttgctattataaaaaatatatgtttgcagctttcacatcacggtgaataat |
497 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
21019511 |
ttcggctccattcttctcttcttgagagttttggatgcattaataatatttgctattaaaaaaaaaatatgtttgcagctttcacatcacggtgaataat |
21019610 |
T |
|
| Q |
498 |
cttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattcttc |
564 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
21019611 |
cttaggagggtcataactataatgcaagtaagcaatccccctggcagatcccactgcaatattcttc |
21019677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 464 - 560
Target Start/End: Complemental strand, 1435974 - 1435881
Alignment:
| Q |
464 |
atatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatatt |
560 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1435974 |
atatatttgcagctttcacatcacggtgaataatcttagg---gtcacaactataatgcaagtaagcaatccccctggcagatcccaacgcaatatt |
1435881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 464 - 564
Target Start/End: Complemental strand, 1429364 - 1429267
Alignment:
| Q |
464 |
atatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattctt |
563 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||| |||||| || |||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
1429364 |
atatatttgcagctttcacatcacgatgaataatcttagg---gtcacagtgatcatgcaagtaagcaagccctctggcagatcccagtgcaatattctt |
1429268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 464 - 564
Target Start/End: Complemental strand, 1448797 - 1448700
Alignment:
| Q |
464 |
atatgtttgcagctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattctt |
563 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||| ||||||||||| ||| || ||||||||||| |
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| T |
1448797 |
atatatttgcagctttcacatcacgatgaataatcttagg---gtcacaatgatcatgcaagtaagcaagccccctggcagctcctagcgcaatattctt |
1448701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 475 - 564
Target Start/End: Complemental strand, 1441382 - 1441296
Alignment:
| Q |
475 |
gctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattcttc |
564 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| || |||||||||||||| ||||||||||| |||||| |||||||||||| |
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|
| T |
1441382 |
gctttcacatcacgatgaataatcttagg---gtcacaatgatcatgcaagtaagcaagccccctggcagctcccagcgcaatattcttc |
1441296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 564
Target Start/End: Complemental strand, 1455542 - 1455456
Alignment:
| Q |
475 |
gctttcacatcacggtgaataatcttaggagggtcacaactataatgcaagtaagcaatccccctggcagatcccagtgcaatattcttc |
564 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||| || |||||||||||| | |||| |||||| |||||| ||||||||||| |
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| T |
1455542 |
gctttcacatcacgatgaataaccttagga---tcacaatgatcatgcaagtaagccagccccttggcagctcccagcccaatattcttc |
1455456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 34468733 - 34468695
Alignment:
| Q |
81 |
tactatgagtggtgttcgaatcctcgggaatgtttgatt |
119 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||||| |
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| T |
34468733 |
tactatgagtggtgttggaaccctcgggaatgtttgatt |
34468695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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