View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21636_low_9 (Length: 527)
Name: NF21636_low_9
Description: NF21636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21636_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 3206972 - 3206472
Alignment:
| Q |
19 |
gcttcaagttaaaagctatttaacaatggaattttttaacttagattattattttgcatgtaccacttgttttcgtaaatgactatattgtgcacatttt |
118 |
Q |
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| T |
3206972 |
gcttcaagttaaaagctatttaacaatggagttttttaacttagattattattttgcatgtaccacttgttttcgtaaatgactatattgtgcacatttt |
3206873 |
T |
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| Q |
119 |
ataatagacaacaatgtaaaatggtgatttccccaataagtcactatcttttcctcattagatatattttgcatcgacaattctaatggtatcaacaaaa |
218 |
Q |
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| T |
3206872 |
ataatagacaacaatgtaaaatggtgatttccccaataagtcactatcttttcctcattagatatattttgcatcgacaattctaatggtatcaacaaaa |
3206773 |
T |
|
| Q |
219 |
atgacatccaagtccaaccatgatggtagagacatcattttgaacatcattgagtgtttgatcaagattagacggctggaaaatctaaattttgtttgac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3206772 |
atgacatccaagtccaaccatgatggtagagacatcattttgaacatcattgagtgtttgatcaagattagacggctggaaaatctaaattttgttttac |
3206673 |
T |
|
| Q |
319 |
cgtctaatcttgattgaacaatcattgatgtcttgaatgctgaatgtggaatcatcatgattgatgggaatcgaaatttatgacaagttgcttcccttga |
418 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3206672 |
cgtctaatctcgattgaacaatcattgatgtcttgaatgctgaatgtggaatcatcatgattgatgggaatcgaaatttatgacaagttgcttcccttgc |
3206573 |
T |
|
| Q |
419 |
acaactttcgtgtgccgatgggacccttttttgtttcactgaacaagatcttaaactacttttcattttgtggaatcacgaaggattttcagtcctttgc |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3206572 |
acaactttcgtgtgccgatgggacccttttttgtttcactgaacaagatcttaaactacttttcattttgtggaatcacgaaggattttcagtcctttgc |
3206473 |
T |
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| Q |
519 |
t |
519 |
Q |
| |
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| |
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| T |
3206472 |
t |
3206472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 3200897 - 3200850
Alignment:
| Q |
114 |
attttataatagacaacaatgtaaaatggtgatttccccaataagtca |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3200897 |
attttataatagacaacaatgtaaaatggtgatttccccaataagtca |
3200850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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