View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_high_32 (Length: 236)
Name: NF21637_high_32
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 46708858 - 46708660
Alignment:
| Q |
14 |
gagttggacctgttaaaatgccatatactttgctttatcctagaagtgaagctggcctaactggtgcaggcattcccaatagtgtgtccatttgaaatgc |
113 |
Q |
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| T |
46708858 |
gagttggacctgttaaaatgccatatactttgctttatcctagaagtgaagctggcctaactggtgcaggcattcccaatagcgtgtccatttgaaatgc |
46708759 |
T |
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| Q |
114 |
caaaattgttccacgcattcttttacttaggatacttcatctaaataagggatcatcactaccttaaaagttaaaacctgcatcatacagattgagtag |
212 |
Q |
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| T |
46708758 |
caaaattgttccacgtattcttttacttaggatacttcatctaaataagggatcatcactaccttaaaagttaaaacctgcatcatacagattgagtag |
46708660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 46707921 - 46707831
Alignment:
| Q |
14 |
gagttggacctgttaaaatgccatatactttgctttatcctagaagtgaagctggcctaactggtgcaggcattcccaatagtgtgtccat |
104 |
Q |
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| T |
46707921 |
gagttggaacggttaaaatgcaataaactttgctttatccaagaagtgaaggtggactaactggcgcaggcgttcccaacagtgtctccat |
46707831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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