View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21637_high_7 (Length: 437)
Name: NF21637_high_7
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 143 - 424
Target Start/End: Complemental strand, 37672424 - 37672140
Alignment:
| Q |
143 |
ttatgtttttgaaatagatggttagagtttcacccaggatatctaagacatcaatgttcttcttctgcttaataacatgtttggcttcactctccattct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37672424 |
ttatgtttttgaaatagatggttagagtttcacccaggatatctaagacatcaatgttcttcttctgcttaataacatgtttggcttcactctccattct |
37672325 |
T |
|
| Q |
243 |
agattggttgaatatgagaagctcaatgtagattctaatttatagtaaataattagatcttgtatcttgattcttaccttccaggaaatacaccctttgg |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37672324 |
agattggttgaatatgagaagctcaatgtagattctaatttatagtaaataattagatcttgtatcttgattcttaccttccaggaaatacaccctttgg |
37672225 |
T |
|
| Q |
343 |
t---atgtagtatttgacttttcatacaatcaatgcttttgaatttgtggcatgaaataatagtcgtcacttgtaatcctccacc |
424 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37672224 |
tacaatgtagtatttgacttttcatacaatcaatgcttttgaatttgtggcatgaaataatagtcgtcacttgtcatcctccacc |
37672140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 37672551 - 37672484
Alignment:
| Q |
16 |
ctttcatggaaaggtaaaggtaagatgatttttggagtttgaacaagagtttgttggaacaatgtttc |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37672551 |
ctttcatggaaaggtaaaggtaagatgatttttggagtttgaacaagagtttgttggaacaatgtttc |
37672484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University