View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_1 (Length: 607)
Name: NF21637_low_1
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 386 - 591
Target Start/End: Complemental strand, 29658469 - 29658265
Alignment:
| Q |
386 |
acatctaaactttcttggatgcacacaatcataatttgtttagtgaaaaataacttgccacaaatactttgttaacctgctttgttgtttttatcacatt |
485 |
Q |
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| T |
29658469 |
acatctaaactttcttggatgcacacaatcataatttgtttagtgaaaaataacttgccacaaatactttgttaacctgctttgttgtttttatcacttt |
29658370 |
T |
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| Q |
486 |
ttagctatacttttactatttcctcaacaaaaaagaagaaacaattatacttttactaaaatacggttagacgtgcaaattcagatggacctacatgtgt |
585 |
Q |
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| T |
29658369 |
ttagctgtac-tttactatttcctcaacaaaaaagaagaaacaattatacttttactaaaatacggttagacatgcaaattcagatggacctacatgtgt |
29658271 |
T |
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| Q |
586 |
caagca |
591 |
Q |
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|||||| |
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| T |
29658270 |
caagca |
29658265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 29658488 - 29658755
Alignment:
| Q |
1 |
aaaattatcgtttttatttgagtcttgcaagactcaaatgattaatcagtacagttgaatgcagataagatttttgcaagactcaaatagttaatttgta |
100 |
Q |
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| T |
29658488 |
aaaattatcgtttttatttgagtcttgtaagactcaaataattaatcagtacaattgaatgcagataagagttttgcaagactcaaatgattaatttgta |
29658587 |
T |
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| Q |
101 |
aagttgaatgcagataatattagtttttnnnnnnnncaatggattgtgtgtactgtagagtggaagaaaatcagatccattggaatcaaatattggtata |
200 |
Q |
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| T |
29658588 |
aagttgaatgcagataatattaggttttaaaaaaaacaatggattgtg-----tgtagagtggaagagaatctgatccattggaatcaaa------tata |
29658676 |
T |
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| Q |
201 |
ggtatacttttaataattcttacaaggtttatctatatatttagtacattattatttaattgtaaataaatattgattg |
279 |
Q |
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| T |
29658677 |
ggtatacttttaataattcttacaaggtttatctatatatttagtacattattatttaattgtaaataaatattgattg |
29658755 |
T |
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