View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_10 (Length: 398)
Name: NF21637_low_10
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 19043141 - 19042773
Alignment:
| Q |
12 |
atgagatgaatggcacaaatatatgtaacatctggattgatattttgattaggaaataagttgttgttgtaaaacttgtctagtagttggaaagcaacat |
111 |
Q |
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| T |
19043141 |
atgacatgaatggcacaaataaatgtaacatctggattgatattttgattaggaaataagttgttgctgtaaaacttgtctagtagttggaaagcaacat |
19043042 |
T |
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| Q |
112 |
gattaatcagatcaattagaaatgctattgaaatttgaatatttcactcaatcttttcaataatatgtagaaagacttttttatacatatttggatgcat |
211 |
Q |
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| T |
19043041 |
gattaatcagatcaattagaaatgctattgaaatttgaatatttcactctatcttttcaataatatgtagaaagact-ttttatacatatttggatgcat |
19042943 |
T |
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| Q |
212 |
ataaaatagagtttaaaggcaggttaaaaatagtgatttttaacacttttgtatgaaaactttaaagactaagtttataaca-tttatttcacagtatca |
310 |
Q |
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| T |
19042942 |
ataaaatagagtttaaaggcaggttaaaaatagtgatttttaacacttttgtatgaaaactttagagactaagtttataacattttatttcacagtatca |
19042843 |
T |
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| Q |
311 |
taaaccagtttgataaataaattaaattattcaaggatgatttgatactgaattacacaatctagagatc |
380 |
Q |
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| T |
19042842 |
taaaccagtttgataaataaattaaataattcaaggatgttttgatactgaattacacaatctagagatc |
19042773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 53808030 - 53807991
Alignment:
| Q |
243 |
agtgatttttaacacttttgtatgaaaactttaaagacta |
282 |
Q |
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| T |
53808030 |
agtgatttttaacacttttgtatgaaaattttagagacta |
53807991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 47225540 - 47225486
Alignment:
| Q |
117 |
atcagatcaattagaaatgctattgaaatttgaatatttcactcaatcttttcaa |
171 |
Q |
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| T |
47225540 |
atcagatcaaccagaagtactattggaatttgaatatttcactctatcttttcaa |
47225486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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