View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21637_low_14 (Length: 369)
Name: NF21637_low_14
Description: NF21637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21637_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 35721935 - 35722277
Alignment:
| Q |
11 |
caaaggcgtggaaataaatttcttatagataaaagaaaaatagagagaatttcccaacgaactcaaaccataaactttgtcttctaacttaaatcaaatt |
110 |
Q |
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| T |
35721935 |
caaaggcgtggaaataaatttcttatagataaaagaaaa-tagagagaatttcccaacgaactcaaaccataaactttgtcttctaacttaaatcaaatt |
35722033 |
T |
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| Q |
111 |
tgcaaatgaaatttcccaaacttttaaaaggtgtgatgacattcaattttatcaatatttataaaaataattaccagtgtcgacgtgtcacgacatgtgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
35722034 |
tgcaaatgaaatttcccaaacttttaaaaggtgtgatgacattcaattttatcaatatttaaataaataattaccagtgtcgacgtgtcacgacatgtgt |
35722133 |
T |
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| Q |
211 |
ctatgtctgtgtcaatgcttcatagctatcactcggtaaaaagaaaaataacttaattttcactaaacacaattcagagtcgcgagagctataatataac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35722134 |
ctatgtctgtgtcaatgcttcatagctatcactcggtaaaaagaaaaataacttaattttcactaaacacgattcagagtcgcgagagctataatataac |
35722233 |
T |
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| Q |
311 |
ggatcaatgaagattatttctaaacatgaaaaaacacaccttaa |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35722234 |
ggatcaatgaagattatttctaaacatgaaaaaacacaccttaa |
35722277 |
T |
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